RNA id: TCONS_00055674


Basic Information

Item Value
RNA id TCONS_00055674
length 885
RNA type processed_transcript
GC content 0.53
exon number 2
gene id XLOC_028716
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 18592743 ~ 18595525 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGTCCGCGGAAAAGTGGAATTACGACTTCGCCGAAAACCGACCGCTCGCGCCGGGCGACTACGAGTGGCAGGAGGTGGACGCCGACGAAGTGCCGGACTTTTACACCAGACCCCCTCGCGTAAAACGGCCCTCTTCGGCCGGGACTGTGGATCATAACGGGAACCACGATTATTTCTTGACGGCTCCCTCTCCGTCCCCGGAGAGCGGAGCGGGGAACTCCGAACGCGCGGACGCCGGGAACCGCTCGCTCAGCACGCCGAGGAAACGACCGTCGACGGAAGATCAGGGTAAATGTTTCGCGGCTCGGACGTCTCTCCGTTCGCGAAAGCGACCTTTTCTAACACCATCTACGTTCTCCCAATAGATGATCTTCGCCGAAGCAAAAGACCCAGCGTCCACGCGAGCGAGGCCGACCCCTGTCCGGACGCGACGAGCTCGCTCGAGCGCGCTCCCTGCGAACCGGACCCCAAAACGTAAAGgagATACGCCGAGAAGCCCGCCCTCACCATCGACTACTTCGCCAGCCTTGCCAAGTAAACGGGGACAGACGGCGCTTCCAAAATACAAATCGAGCCTCGGAGGGGCTGAATAAGCACTGAATTTTTACACTAAACTTTTGGCACTCGACAGATTTTATATTTGCCTCAAAAGCAGACGATGTAGCAGTATGCGATTGGAGTTGCTTCGTTTCTTCTTTTACTacctatgtatatatatatatatattttttttctttttataatgtaGCACGTTTTCGTTTCATGTTCATGTCAAAGCAAAACGCGATCCTTCACTAATCCACCGCGCTTCACTTTAAGAATTGCTGCGCGGTTTTTCAAACGCATCTCCCGAACGAACCGTTTTAAAGTAGCCCACATATccc

Function

GO:

id name namespace
GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0000082 G1/S transition of mitotic cell cycle biological_process
GO:0007050 cell cycle arrest biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0042326 negative regulation of phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity molecular_function
GO:0051087 chaperone binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040812-3 Predicted to enable chaperone binding activity and cyclin-dependent protein serine/threonine kinase inhibitor activity. Predicted to be involved in G1/S transition of mitotic cell cycle; negative regulation of cell cycle; and negative regulation of cell population proliferation. Predicted to act upstream of or within regulation of cell cycle and regulation of cell population proliferation. Predicted to be located in endosome. Predicted to be active in cytoplasm and nucleus. Is expressed in otic vesicle. Human ortholog(s) of this gene implicated in acute myeloid leukemia; breast cancer; multiple endocrine neoplasia type 4; and myelodysplastic syndrome. Orthologous to human CDKN1B (cyclin dependent kinase inhibitor 1B).

Ensembl:

ensembl_id ENSDART00000147220

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058187 lncRNA downstream 710900 17875071 ~ 17882930 (-) True XLOC_028707
TCONS_00058186 lncRNA downstream 710953 17875071 ~ 17882877 (-) False XLOC_028707
TCONS_00058185 lncRNA downstream 711211 17875071 ~ 17882619 (-) False XLOC_028707
TCONS_00058184 lncRNA downstream 711333 17875071 ~ 17882497 (-) False XLOC_028707
TCONS_00058183 lncRNA downstream 1019148 17571295 ~ 17574682 (-) False XLOC_028696
TCONS_00055681 lncRNA upstream 10795 18605935 ~ 18606567 (-) True XLOC_028717
TCONS_00057349 lncRNA upstream 59542 18654682 ~ 18679692 (-) True XLOC_028721
TCONS_00058188 lncRNA upstream 117623 18712763 ~ 18714926 (-) True XLOC_028722
TCONS_00058189 lncRNA upstream 357342 18952482 ~ 18954075 (-) False XLOC_028727
TCONS_00058190 lncRNA upstream 357342 18952482 ~ 18964897 (-) False XLOC_028727
TCONS_00055672 mRNA downstream 81280 18500012 ~ 18512550 (-) True XLOC_028715
TCONS_00055670 mRNA downstream 138350 18453702 ~ 18455480 (-) False XLOC_028714
TCONS_00055671 mRNA downstream 139239 18453749 ~ 18454591 (-) True XLOC_028714
TCONS_00055668 mRNA downstream 156931 18432182 ~ 18436899 (-) False XLOC_028713
TCONS_00055669 mRNA downstream 158906 18432853 ~ 18434924 (-) True XLOC_028713
TCONS_00055675 mRNA upstream 2022 18597162 ~ 18606524 (-) False XLOC_028717
TCONS_00055677 mRNA upstream 2525 18597665 ~ 18606573 (-) False XLOC_028717
TCONS_00055678 mRNA upstream 3940 18599080 ~ 18606524 (-) False XLOC_028717
TCONS_00055679 mRNA upstream 4416 18599556 ~ 18606573 (-) False XLOC_028717
TCONS_00055680 mRNA upstream 7870 18603010 ~ 18606531 (-) False XLOC_028717
TCONS_00055660 other downstream 404310 18189406 ~ 18189520 (-) True XLOC_028709
TCONS_00055659 other downstream 504824 18035497 ~ 18089006 (-) True XLOC_028708
TCONS_00055658 other downstream 555283 17999517 ~ 18038547 (-) False XLOC_028708
TCONS_00055657 other downstream 644512 17915932 ~ 17949318 (-) False XLOC_028708
TCONS_00055646 other downstream 853045 17727386 ~ 17740785 (-) False XLOC_028701
TCONS_00055676 other upstream 2520 18597660 ~ 18606538 (-) False XLOC_028717
TCONS_00055683 other upstream 58008 18653148 ~ 18653241 (-) True XLOC_028719
TCONS_00055684 other upstream 59015 18654155 ~ 18654261 (-) True XLOC_028720
TCONS_00055699 other upstream 452326 19047466 ~ 19047555 (-) True XLOC_028730
TCONS_00055714 other upstream 1454184 20049324 ~ 20063234 (-) True XLOC_028742

Expression Profile

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