RNA id: TCONS_00055676


Basic Information

Item Value
RNA id TCONS_00055676
length 724
RNA type nonsense_mediated_decay
GC content 0.48
exon number 5
gene id XLOC_028717
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 18597162 ~ 18606573 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACACACCGTAGCAGCAGCATGGCGTGAGCGGTCGTGCGCGTGCTGGCTGCAGACAAACTTGCATCGTCTTGCAGACGGGAATGGATTTGACGGAAGGCTCCGCGCTCGGCGTGTTCAGCTGCCAGCTGTGCGAGGTTTCCAGCCCATACAGCTTTTACGGACAGAAGCCGCCGAACACCAGAGCTATAGTCTTTGTTCCACTGAATGAAGTCTGTAGATGGGGATCAACTTTGAATGTCTTCCTGACATGGCATCCTCCTGAAGGCTGTCATTTGGGCCGAATATgCTCTTGGAGGAATGTTTTGGCATAAAGGACCCCTTCAGCCCAGAGAGAGAGAAGTTTCTGATTTTAGGATCCAAGTGCTCTCTGTGCAGCAAGACTGTGTGTGTGGGAACGGACTGCAGTTTGTTCTACACCAAGCGCTTCTGCTTGCCTTGTGTGCGGGAGCACCTCGATCAGTTTCCAGAGCAGGTTCAGAACGAGCTGCTGAGGAAGAAGAGCGTCCAGAAGAGCACGTCCTCATGATAATTGATTTCATGTGATTATATTCATTTATGATCAGATCAATGAAATGAAAGTGTGAGTGATGATAAAGTTTGATTTTGTGGTTGTGCTCGTATGAAGCAAGTTTGAGCAGCAGAGCATCTGTTGAATGTGACCGTTTATGGTGTTTACACAATATTTTGTAAGTGACAAGAGTGTTAAATAAATAGTGTGAAGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000141386

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058187 lncRNA downstream 714730 17875071 ~ 17882930 (-) True XLOC_028707
TCONS_00058186 lncRNA downstream 714783 17875071 ~ 17882877 (-) False XLOC_028707
TCONS_00058185 lncRNA downstream 715041 17875071 ~ 17882619 (-) False XLOC_028707
TCONS_00058184 lncRNA downstream 715163 17875071 ~ 17882497 (-) False XLOC_028707
TCONS_00058183 lncRNA downstream 1022978 17571295 ~ 17574682 (-) False XLOC_028696
TCONS_00057349 lncRNA upstream 48144 18654682 ~ 18679692 (-) True XLOC_028721
TCONS_00058188 lncRNA upstream 106225 18712763 ~ 18714926 (-) True XLOC_028722
TCONS_00058189 lncRNA upstream 345944 18952482 ~ 18954075 (-) False XLOC_028727
TCONS_00058190 lncRNA upstream 345944 18952482 ~ 18964897 (-) False XLOC_028727
TCONS_00058191 lncRNA upstream 345944 18952482 ~ 18965119 (-) False XLOC_028727
TCONS_00055673 mRNA downstream 2135 18592743 ~ 18595525 (-) False XLOC_028716
TCONS_00055672 mRNA downstream 85110 18500012 ~ 18512550 (-) True XLOC_028715
TCONS_00055670 mRNA downstream 142180 18453702 ~ 18455480 (-) False XLOC_028714
TCONS_00055671 mRNA downstream 143069 18453749 ~ 18454591 (-) True XLOC_028714
TCONS_00055668 mRNA downstream 160761 18432182 ~ 18436899 (-) False XLOC_028713
TCONS_00055682 mRNA upstream 3001 18609539 ~ 18635005 (-) True XLOC_028718
TCONS_00055685 mRNA upstream 114247 18720785 ~ 18742106 (-) False XLOC_028723
TCONS_00055686 mRNA upstream 119510 18726048 ~ 18741942 (-) True XLOC_028723
TCONS_00055687 mRNA upstream 152751 18759289 ~ 18775548 (-) True XLOC_028724
TCONS_00055688 mRNA upstream 230253 18836791 ~ 18840919 (-) False XLOC_028725
TCONS_00055674 other downstream 2520 18593830 ~ 18595140 (-) True XLOC_028716
TCONS_00055660 other downstream 408140 18189406 ~ 18189520 (-) True XLOC_028709
TCONS_00055659 other downstream 508654 18035497 ~ 18089006 (-) True XLOC_028708
TCONS_00055658 other downstream 559113 17999517 ~ 18038547 (-) False XLOC_028708
TCONS_00055657 other downstream 648342 17915932 ~ 17949318 (-) False XLOC_028708
TCONS_00055683 other upstream 46610 18653148 ~ 18653241 (-) True XLOC_028719
TCONS_00055684 other upstream 47617 18654155 ~ 18654261 (-) True XLOC_028720
TCONS_00055699 other upstream 440928 19047466 ~ 19047555 (-) True XLOC_028730
TCONS_00055714 other upstream 1442786 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055724 other upstream 1569605 20176143 ~ 20177868 (-) False XLOC_028749

Expression Profile

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