RNA id: TU2431956


Basic Information

Item Value
RNA id TU2431956
length 245
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G2127025
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30126616 ~ 30126860 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggatagaaaacactctgaagtttctaaaactgtttgaatgatgtctgtgagtataacagaactcatatggcaggcaaaaacctgagaaaaatccaaccaggaagtgagaaatctgaggtttgtagtttttcaaagcttggcctaccgaatacacagtgtctatggagtcaagttgcacttcctacggcttccactagatgtcaaccgtctttagaaacttgtttcaggcttctgctataattgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2431919 lncRNA downstream 76923 30047809 ~ 30049693 (-) True G2126989
TU2431823 lncRNA downstream 119303 29999464 ~ 30007313 (-) True LOC110508904
TU2431895 lncRNA downstream 135065 29989503 ~ 29991551 (-) True G2126966
TU2431893 lncRNA downstream 138398 29987806 ~ 29988218 (-) True G2126964
TU2431892 lncRNA downstream 139013 29987336 ~ 29987603 (-) True G2126963
TU2431967 lncRNA upstream 10249 30137109 ~ 30143209 (-) True G2127031
TU2431993 lncRNA upstream 68270 30195130 ~ 30223590 (-) True G2127056
TU2432043 lncRNA upstream 177563 30304423 ~ 30304655 (-) True G2127102
TU2432047 lncRNA upstream 184344 30311204 ~ 30311541 (-) True G2127106
TU2432049 lncRNA upstream 185280 30312140 ~ 30312388 (-) True G2127108
XM_021589807.2 mRNA downstream 11632 30100641 ~ 30114984 (-) True LOC110508906
XM_036966136.1 mRNA downstream 94129 29999454 ~ 30032487 (-) False LOC110508904
XM_036966135.1 mRNA downstream 111328 29999454 ~ 30015288 (-) False LOC110508904
XM_021589803.2 mRNA downstream 127672 29991593 ~ 29998944 (-) True LOC110508903
XM_021589800.2 mRNA downstream 142088 29981103 ~ 29984528 (-) True LOC110508901
XM_021589809.2 mRNA upstream 17175 30144035 ~ 30183579 (-) False LOC110508907
XM_021589810.2 mRNA upstream 17175 30144035 ~ 30183598 (-) False LOC110508907
XM_021589808.2 mRNA upstream 17175 30144035 ~ 30187260 (-) False LOC110508907
XM_021589812.2 mRNA upstream 17175 30144035 ~ 30187260 (-) True LOC110508907
XM_021589813.2 mRNA upstream 62025 30188885 ~ 30243018 (-) False mast3a
TU2430565 other downstream 1002874 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 1047872 29078039 ~ 29078744 (-) True G2125813
TU2430463 other downstream 1240762 28885468 ~ 28885854 (-) True G2125723
TU2429949 other downstream 1434146 28692139 ~ 28692470 (-) True G2125290
TU2429926 other downstream 1463190 28662708 ~ 28663426 (-) True G2125270
TU2432085 other upstream 274353 30401213 ~ 30401807 (-) True LOC110508917
TU2432121 other upstream 307575 30434435 ~ 30434854 (-) True G2127177
TU2432439 other upstream 426729 30553589 ~ 30555187 (-) True G2127455
TU2432521 other upstream 578225 30705085 ~ 30706545 (-) True LOC110508928
TU2433286 other upstream 1117231 31244091 ~ 31244692 (-) True G2128216

Expression Profile