RNA id: TU2431967


Basic Information

Item Value
RNA id TU2431967
length 6055
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G2127031
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30137109 ~ 30143209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGGAAttcaaatggaattgaccccaactctgCTTCCAGTGCTTTCTTTTATACTGTAGCCTGTAGCCATGATTGACTATGGTATTACTGTTAGTATTCTTGGTGTTTTTATTTCTACTTGAATATACTCACAGAGCATCAATCTATTGGATCTTAACTCTCGGTGCTGTATGGCCTAGTCTCTAGGAAGCCTGTCTAGTACAATGTTCTTCTCACAAGCGTTTGCTTTTGTCACAGCGTTACTACTACTCGCAGTACTTCCTCTTTGAGCTTGACTGTTGTTTTAATTTGACACAAGCTTGATTCACAGAGCTGTAGAACATTGTTGTACATAAGAAAAACCCCAGATTAACGTTATATGACCCATATATCTACAGACAGTAACAGGCAGTGTGACTGTCAGTCTAAAAGCTGTATTTGCTGTACGTAACCATGCAAACAGAAAGTATTGAATGCTTTCCTTTCCAACTGTGTCCCCGCTGCAGGGGAAACTGCTGGAGGATGCACAGTATCCAGCTAAACTTGAGCCAAATGAAGGATGTATTTCATGTAGCAAATAAAATATCTGATCCGTTTTGAGCATGACCACGGAGGTTCGAGAGATTTTCTATAAGTACAGAATGCATGTAAATCCTTCTTTTGGATAGTACCTAGACACTAGCCCTAATACTCGTGCTGTTTTAAGTGTGTACGTCTCATGTCGTAGACCAGTAtaatgcacaaacaatagtaagtGAATAAGAATACATGGAGATTTACAGACACACTCGCTGTCGGGTGAATCCCTCCACGGGTACTGAGCAGTACTTTTGTTGTGTGGCTTCAGGGACTTACTCTGCCAATGCTTCTATTCCTTTTCCATAGCATAGACTTTGTTTGTGCGAATACACTTCAGCCAAAATTTGAAGGTTGATTCTTGACTTAAAGTGAAAATCCACCCAAACTATCTCtggtatatattttttcattagtccacttgatacagtcccaaaacatTTTAGGACTGTATCAACAGAAAAATCTAAACAATTGAATTGAATGGATTTTCCCTTTTAAAGAAACATCATGTAATGAAACTGAGGATATCGAGGATTTAAGTTTGGTGACTGTTAAGTGCTGCGTTTAGATTTGTTGAGAACATTTGTAGAATGATGGCCACTCCTTTTTGGGCAGTTCTAAACATGATCATTTGCTCAAAGTGTGATTTATTCTCGCTCTTTTGGTAATACAGATTAAGTATGATGCGTAAATATTGCAATTGAACAGTCATTCAAGTGGATTGGTTAATTAGTTATGGGAAATTAGATGGTACAAATGTTGGTTGGAGACAAAAATGATGTTAAGGATAAATACATTGGTACTGTTTAATGGTGCTTTTCACAGTTCTTGGCCAGAAGACTAGACAAGAATTAAACTCAAAGTGACATTAGTTGGGTGTCTTGAGAGGGATATAAAAGAGTGTGAATCACAAAGTTAAGAAGTGCCTTCTCTGTCTGCGTTACTTAGCTCTTGTCTTTATGTCAGAAGAGCTTCTCTCCTGTAGACAGAGccacagtgtactgtagtctTTGTTTAAAAAGCATTTGCCAATGTCATAGCCTGACGACCCGCACTAAATTCTTCCACTTCTCTGTTGTTCACTACATACTTTAGTCCGAGACTACCATCATTGAAGTCATTTGTGGTGAGGGGAGTTGTGCAAAATAAAGTAATCAGCGATTAGATTGTCTCTAACCAATTAGTGTCAAAGCCAATGACAAATTTTCAAACCGCCGCTTTACCCacgtgttctggctctggcccaacccatcggtttctggaccaatcaggtGGCCCTGAATATATTTGCATTCGGTGACGGGTCGGGGAGGTATTGCGTAAGAAACTAATGTCCGGGGGTGTGGCATACCGTTTGGCTGGAGCAAGGAGTCTGAGTAGCCAGGCAACTAATGTCAACCCCTGAAGAGAACTGACAAATGAGCATAGTTATCATCTttcctttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcaagtTATGGAGGTTGTTTGTTTAGTTATGCTTCTCTTTTGTTCTTTTTTTGTGACTGGGGCTATTGCTTGGTGCTCTTCAGTGAGCGAGGCAGTTTCCTTTGGGGTTTGTTGTATATTGGATCAAACCTAGAGTGGATAGAAATGTGAATACACAGTCGTAGCCCAACACCGCGTTTTGTTTAATAAGCCGAATCTCATTCGATAAGCACTCAATTGAATGCATGCAGTATTTCTGTGTTTTCACATCAATACCCTGTGAATTCAGAGCCAGTTTACCCAGCTACTGACGTATTTATTTACAGTCCGTTGGACCATCATTTTGTCAATGTGCTCTTTCCTTTTCCACACTCCTTAATTGAGTGTGTCTAGGTCTACAAAGTATGAATGAATCCTAAACCGTGTCAGTGAAGCTCAGTAAGCCATCATAGTGTTTTTTTATTAAGTGTCTCATGTCGGGGATGTTTTATCTGACTTTCTTTGTGAATCAAAGTGAAAAAAAATGTTGTTGTCCCCTTACACAATACATAGGGTGGAGGCATGACAAACTTTGAAATAGTAGCCTGTATTCTGAACCTGTTTTGAAATTGACATTGAGGCAAGAGGGACTAATGTCCATTAttgctgtttttcatgattcaaTTGTTTAACTGTATATACTATAAAACTGTGTTCCGTGTCTGAAAGGGAAGCTAGCTAATATGCAATCGGTATAATTGGTCGGTCCTCAGCTCTTTAATGCTATATGAATGTCATGGAGTCACATTAACGTCACTTGCATTAACATTAATGTTAACATTTGTGCAGTGATCGTGTTTCGGTGGTCGTGCCCAATGAGATTGGATTGCGGAAGAGGGATGAGGGTGAGTTGACCATTGTTGTGCTTTGACTTGGAGCAGAAGTTGCTTTGAATTGTCCTTTACCCTGTTATTGTGAAACAGCATGTGTCCAAGCACCCTCCAAAATGATCAGATGAATTACCCATTATTGCTTATCTCTGGTACAAAATACTTGTAATAAGGTATCATACTTCTACCATATCATTTACTGAATACAAGTAATTAACATTTATTACGTTTGATGAATATTTAGGTTTGAATCATATTTGGaaaaaatatattgaaatatATCTTGACATATTGTTTTTGGGTTATATATTCTGATTTAATTATGCTGGAAACGGATCAGAAACAGAAGCTAACTTAATCAGAGCTTAGATGGTAACACGTCTATTGACGTGCCACAGCAGCATTTCATCAGTGGGCCAAGTGATATCTAGTTTCCAGAAACTGAGCTTTATCATAATCAAAAGCAAGCTTTCCTTCTTTTTTGATTGTGGTTCTATTGATTTTAATTGACCCACAATAATTATAATGAAGAGGAGGCAGGCTCATCTATGTTTAAAATGCAGCTCTCAATCTAGTTGTCCATGATGATATCATACTGATTGGTCAACCTTGGCCCCATTTAACCAACTCACACATATGTGTTTGTATCAAGTCTGAGTCGAGATTATCAGTAGCCTTGACACCAGTGTCTTTCAGCAAAGCTCCATTGTTACTATCCTACCACGGGTGGTGACAACAGAGCTGACCAACACTGGGACTAGCTGCTATCTAGACTACAGCCTGTGTATTTTTAAGATGATAAGATAGTTTTTCTGAGCAGAAAATAGTTTCCTATACAGATCTGCTTTGTCCATAGAATGGGGAAAGCACCTttattattttcatttatttcagATCATGGTggcaattattttttattttgacatGAACATGTATTCTCAGTTTGAGATTCTGGTTGTGTTTTTTATTTAGCAAAAGGAGGCCGTTTGAAAGTTTCACCAGGGGAGTGTTTGAGGTGGTATGAAAATAATGTATAATTCGAAGAGCGGGGCATTTATTAATCATTGGATAAAGTCCCCCCAAATGCACTAGAAAACACATACTTTATACCATCCAAACATGTTGCCAACAACAATAGTTAAGGTACAAATGTAAATGGATCAGAAACACTCCTTCGGAGAATAACAGACCTTTGTACATGGAACAATGATGGCATTAGAAAGTGTTCCTTTAAGGTGCCTGAGTAGGGTTTGTTTTTAATTAGGCTTTTAAGCTAATTGATTTGTCTGTCCAAgtgtttgttttggtttgttttgtttgtttttgtttgttaatgATAACCGTACAGAATCTATCAAATAAGCTAGCTTGAATATTTTCCTCCATACAGAAAAGTACAAATGTTTACGATATCTAATTAACCAAATAGCAAGTATGCGTTTGAGAATCAATCAGTCTGTCACTAAAAATGACTGATcgattgatttgatttatttctttCCTCTGTCATTTTAAACTTGAAGATGTTATGACTGCTTATTCTTTTGTTTAGATGTAGTTGTTTTTTACTTGTCAAACAGTGCTCCCTCAATATGACAAGAGAAGAATTGTTACCATCGTCTGCTTAGAACAAAATCGacatatttttcttttttttttaaaggcacccAGGGCAGAATGGTCCCTGGGTGGCTTAGAATCATTAAGGAGATGCTGAACAGGCCGATTGGCATGTGTTTTTCTGTTTCTCATGACAAAAAGTCGATTtcagtcttggaggtgtgtttcctGACCGATTCCTCATTTGGTTAATAATGTTTGTCCCCCATTAGACACTGGAAGCCTATTTCCCCTCCTCAAAATCCCAGAATGAATCTAGGATAagaagaaatctgtcattcatttagACTTTTTGGCCGAGGATGTTTTAGTTGCTAAATTAGAAATCTgactaaggtgtttggtgcagtatttctcaagtttaAAAAATCAGAGACGCATTGTCTTACGTTAACAAAGTCTGAGCTGCTGAGCACGTCTGCCTTACTGTCTATGCTATTGGATAGAGAGAAATTACCGCAGCTATTCATCCCATGTTAGTGGGTAAATGGACACCGTCGAATCAAAACCCAACATTAATTTACCTGTTGTGACACACGGATGTTCCAAACTCCATTTTAGACCAGACTGACCCTGTGAcaaaaatgatcctatttacactttgttgTAAATTTTGACattagaataaatgtttctgacacaTATCGATGACGCAAATCCTAACTTTAGACAATCTTAATTTAGCGTTTTTGCACATcgtgcattgatgtcaatgggcgattaaaaaaattattataataatacattCATTTTTTGGAGTTAGTCGCAAATCTCAAGTTAGGTTTTGGCTGTAGATTACACCATAGATGATTTGGGAGGCTTTAGTTTTCAGACTGCTTttcaagagtgagagagaggtttaGCCAACTAGTACATTTTAATTTGGAAATTGGAAATGAGAAGAGGCATGGGTTTCGATTTTGCACTAAGAGGTCATCCTCGTCTCACTAAGATGGAGAAATGCAGTACATTCGTTGACTTGCTCTCTGTCATTCAAAACAGACTCAATTAAAAATGATGCTTTCATTTACTTCTGTTATCTAATCTCTGCAACCCTTCAATGTAGATTTCATCCTAGGTGGTGTTTATGATCATGTGACAGTTGTAGAATGCACGTCCGGTACAGTACATTTTGACAAGCCTTTATTTGCTTTGGAGAAATCAAAGTACAGTGTGATAATATGATTCTTATTGTAGCGAAATTTGGCGTCATGTTTTCCCCTTTTTTCAAAACAGTAAAATGGACATGAACCAGACTGTCTGATAAAGCTACTCTACACCAAAGTGCAATTGAACTCAGAGGGAGCACTGTTGGTGAACCAGTGGGAGTCTTCTCTCCTGGTTGTGGTGTGCACAATCTTTATGTATGGAAGATTATTCTTCTTCTCATCTTTTTCCAGTCTGTCTTAGATAATTCAGAtgcaacattttttattttgttttctgtgtacagCTTGCTTCGGAGTTGTCTCAAACAGGTACTCTTACTTCTGTACGGTTCTTTCCTTAGGATGATGCaatgattttaaaaaataataataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2431956 lncRNA downstream 10249 30126616 ~ 30126860 (-) True G2127025
TU2431919 lncRNA downstream 87416 30047809 ~ 30049693 (-) True G2126989
TU2431823 lncRNA downstream 129796 29999464 ~ 30007313 (-) True LOC110508904
TU2431895 lncRNA downstream 145558 29989503 ~ 29991551 (-) True G2126966
TU2431893 lncRNA downstream 148891 29987806 ~ 29988218 (-) True G2126964
TU2431993 lncRNA upstream 51921 30195130 ~ 30223590 (-) True G2127056
TU2432043 lncRNA upstream 161214 30304423 ~ 30304655 (-) True G2127102
TU2432047 lncRNA upstream 167995 30311204 ~ 30311541 (-) True G2127106
TU2432049 lncRNA upstream 168931 30312140 ~ 30312388 (-) True G2127108
TU2432050 lncRNA upstream 170268 30313477 ~ 30313708 (-) True G2127109
XM_021589807.2 mRNA downstream 22125 30100641 ~ 30114984 (-) True LOC110508906
XM_036966136.1 mRNA downstream 104622 29999454 ~ 30032487 (-) False LOC110508904
XM_036966135.1 mRNA downstream 121821 29999454 ~ 30015288 (-) False LOC110508904
XM_021589803.2 mRNA downstream 138165 29991593 ~ 29998944 (-) True LOC110508903
XM_021589800.2 mRNA downstream 152581 29981103 ~ 29984528 (-) True LOC110508901
XM_021589809.2 mRNA upstream 826 30144035 ~ 30183579 (-) False LOC110508907
XM_021589810.2 mRNA upstream 826 30144035 ~ 30183598 (-) False LOC110508907
XM_021589808.2 mRNA upstream 826 30144035 ~ 30187260 (-) False LOC110508907
XM_021589812.2 mRNA upstream 826 30144035 ~ 30187260 (-) True LOC110508907
XM_021589813.2 mRNA upstream 45676 30188885 ~ 30243018 (-) False mast3a
TU2430565 other downstream 1013367 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 1058365 29078039 ~ 29078744 (-) True G2125813
TU2430463 other downstream 1251255 28885468 ~ 28885854 (-) True G2125723
TU2429949 other downstream 1444639 28692139 ~ 28692470 (-) True G2125290
TU2429926 other downstream 1473683 28662708 ~ 28663426 (-) True G2125270
TU2432085 other upstream 258004 30401213 ~ 30401807 (-) True LOC110508917
TU2432121 other upstream 291226 30434435 ~ 30434854 (-) True G2127177
TU2432439 other upstream 410380 30553589 ~ 30555187 (-) True G2127455
TU2432521 other upstream 561876 30705085 ~ 30706545 (-) True LOC110508928
TU2433286 other upstream 1100882 31244091 ~ 31244692 (-) True G2128216

Expression Profile