RNA id: TU2432043



Basic Information


Item Value
RNA id TU2432043
length 233
lncRNA type intronic
GC content 0.46
exon number 1
gene id G2127102
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30304423 ~ 30304655 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGTGATTTGgaatttctattggagaagcagtttctgtcCATTACATATTGGACCATATTTGCTAGAATGTtatccagctaactagctagctagagtgGCTAGCTAGCTTATCTGTTGCATGTACGTGCTGACATTTCACTACCCAGGCTACGTGGTGGAATGCAAATGGGTCTCAACCAATGAAAATGTGTGGTGGGCAGGCCCAGCCTGAGTCGACCCAGCCCATAGCCAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2431993 lncRNA downstream 80833 30195130 ~ 30223590 (-) True G2127056
TU2431967 lncRNA downstream 161214 30137109 ~ 30143209 (-) True G2127031
TU2431956 lncRNA downstream 177563 30126616 ~ 30126860 (-) True G2127025
TU2431919 lncRNA downstream 254730 30047809 ~ 30049693 (-) True G2126989
TU2431823 lncRNA downstream 297110 29999464 ~ 30007313 (-) True LOC110508904
TU2432047 lncRNA upstream 6549 30311204 ~ 30311541 (-) True G2127106
TU2432049 lncRNA upstream 7485 30312140 ~ 30312388 (-) True G2127108
TU2432050 lncRNA upstream 8822 30313477 ~ 30313708 (-) True G2127109
TU2432058 lncRNA upstream 18743 30323398 ~ 30325462 (-) True G2127116
TU2432066 lncRNA upstream 26731 30331386 ~ 30331689 (-) True G2127124
XR_002471374.2 mRNA downstream 11 30301087 ~ 30304412 (-) True LOC110508912
XR_002471372.2 mRNA downstream 25183 30273893 ~ 30279240 (-) True LOC110508910
XM_021589814.2 mRNA downstream 51053 30188885 ~ 30253370 (-) True mast3a
XM_021589813.2 mRNA downstream 61405 30188885 ~ 30243018 (-) False mast3a
XM_021589808.2 mRNA downstream 117163 30144035 ~ 30187260 (-) False LOC110508907
XM_021589828.2 mRNA upstream 95056 30399711 ~ 30401538 (-) False LOC110508917
XM_021589830.2 mRNA upstream 104616 30409271 ~ 30416644 (-) True angptl4
XM_021589831.2 mRNA upstream 137358 30442013 ~ 30447448 (-) False LOC110508919
XM_036967076.1 mRNA upstream 325287 30629942 ~ 30649835 (-) False LOC110508217
XM_036967077.1 mRNA upstream 325287 30629942 ~ 30649835 (-) False LOC110508217
TU2430565 other downstream 1180681 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 1225679 29078039 ~ 29078744 (-) True G2125813
TU2430463 other downstream 1418569 28885468 ~ 28885854 (-) True G2125723
TU2429949 other downstream 1611953 28692139 ~ 28692470 (-) True G2125290
TU2429926 other downstream 1640997 28662708 ~ 28663426 (-) True G2125270
TU2432085 other upstream 96558 30401213 ~ 30401807 (-) True LOC110508917
TU2432121 other upstream 129780 30434435 ~ 30434854 (-) True G2127177
TU2432439 other upstream 248934 30553589 ~ 30555187 (-) True G2127455
TU2432521 other upstream 400430 30705085 ~ 30706545 (-) True LOC110508928
TU2433286 other upstream 939436 31244091 ~ 31244692 (-) True G2128216

Expression Profile