RNA id: TU2432173


Basic Information

Item Value
RNA id TU2432173
length 237
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G2127222
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30509693 ~ 30509929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCTCCACagcataaccttcactccaaatccaaactcaaaacctacaacctgattttggacaaaATTACCTGGAAGGATTCCTACTACCAAAGATTCTTATTTCCAAGCTATAGAGCAAATGATCTGGCAAACAAACAACAGTAACCTGAAAACACCATTCAACTTGGAACTGAGTTTAGTCTGAAGCTTATATATTAAAgtcaagaagaaaaatacatcaCAATTATATATTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2432171 lncRNA downstream 6695 30502742 ~ 30502998 (-) True G2127220
TU2432162 lncRNA downstream 25244 30483731 ~ 30484449 (-) True G2127212
TU2432069 lncRNA downstream 62440 30442013 ~ 30447253 (-) False LOC110508919
TU2432070 lncRNA downstream 62440 30442997 ~ 30447253 (-) True LOC110508919
TU2432076 lncRNA downstream 68695 30440277 ~ 30440998 (-) True G2127133
TU2432181 lncRNA upstream 801 30510730 ~ 30511163 (-) True G2127226
TU2432456 lncRNA upstream 71076 30581005 ~ 30583262 (-) True G2127470
TU2432459 lncRNA upstream 79059 30588988 ~ 30592364 (-) True G2127473
TU2432464 lncRNA upstream 92593 30602522 ~ 30603707 (-) True G2127477
TU2432473 lncRNA upstream 105281 30615210 ~ 30615523 (-) True G2127485
XM_021589831.2 mRNA downstream 62245 30442013 ~ 30447448 (-) False LOC110508919
XM_021589830.2 mRNA downstream 93049 30409271 ~ 30416644 (-) True angptl4
XM_021589828.2 mRNA downstream 108155 30399711 ~ 30401538 (-) False LOC110508917
XR_002471374.2 mRNA downstream 205281 30301087 ~ 30304412 (-) True LOC110508912
XR_002471372.2 mRNA downstream 230453 30273893 ~ 30279240 (-) True LOC110508910
XM_036967076.1 mRNA upstream 120013 30629942 ~ 30649835 (-) False LOC110508217
XM_036967077.1 mRNA upstream 120013 30629942 ~ 30649835 (-) False LOC110508217
XM_021589842.2 mRNA upstream 190613 30700542 ~ 30704777 (-) False LOC110508927
XM_021589843.2 mRNA upstream 195156 30705085 ~ 30706591 (-) False LOC110508928
XM_021589856.2 mRNA upstream 395950 30905879 ~ 30907975 (-) True ptger4c
TU2432121 other downstream 74839 30434435 ~ 30434854 (-) True G2127177
TU2432085 other downstream 107886 30401213 ~ 30401807 (-) True LOC110508917
TU2430565 other downstream 1385951 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 1430949 29078039 ~ 29078744 (-) True G2125813
TU2430463 other downstream 1623839 28885468 ~ 28885854 (-) True G2125723
TU2432439 other upstream 43660 30553589 ~ 30555187 (-) True G2127455
TU2432521 other upstream 195156 30705085 ~ 30706545 (-) True LOC110508928
TU2433286 other upstream 734162 31244091 ~ 31244692 (-) True G2128216
TU2433314 other upstream 809354 31319283 ~ 31320623 (-) False G2128242
TU2433312 other upstream 809412 31319341 ~ 31323364 (-) False G2128242

Expression Profile