RNA id: TCONS_00005263


Basic Information

Item Value
RNA id TCONS_00005263
length 117
RNA type rRNA
GC content 0.50
exon number 1
gene id XLOC_002838
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28923517 ~ 28923633 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCACAgctatatcaccctgcagcccgaCACTGATTAACGACAGAACCTAagtagggctgagcctggtcagtacctggatgggagaccccATTGTTAAAACTAGGTTGGTGTTGAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000175320

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006074 lncRNA downstream 458491 28460213 ~ 28465026 (-) True XLOC_002834
TCONS_00005770 lncRNA downstream 505338 28417651 ~ 28418179 (-) True XLOC_002830
TCONS_00006073 lncRNA downstream 537948 28382085 ~ 28385569 (-) True XLOC_002828
TCONS_00006072 lncRNA downstream 537963 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00005269 lncRNA upstream 204569 29128202 ~ 29138004 (-) True XLOC_002841
TCONS_00006075 lncRNA upstream 342637 29266270 ~ 29491087 (-) True XLOC_002843
TCONS_00005294 lncRNA upstream 2339219 31262852 ~ 31294777 (-) False XLOC_002858
TCONS_00006076 lncRNA upstream 2339219 31262852 ~ 31295006 (-) True XLOC_002858
TCONS_00006077 lncRNA upstream 3154178 32077811 ~ 32084121 (-) False XLOC_002862
TCONS_00005261 mRNA downstream 87705 28736876 ~ 28835812 (-) True XLOC_002836
TCONS_00005260 mRNA downstream 87746 28733021 ~ 28835771 (-) False XLOC_002836
TCONS_00005259 mRNA downstream 162063 28731749 ~ 28761454 (-) False XLOC_002836
TCONS_00005258 mRNA downstream 404012 28502299 ~ 28519505 (-) True XLOC_002835
TCONS_00005257 mRNA downstream 404208 28498377 ~ 28519309 (-) False XLOC_002835
TCONS_00005265 mRNA upstream 164177 29087810 ~ 29101849 (-) False XLOC_002839
TCONS_00005264 mRNA upstream 164177 29087810 ~ 29101849 (-) False XLOC_002839
TCONS_00005266 mRNA upstream 170644 29094277 ~ 29101715 (-) True XLOC_002839
TCONS_00005267 mRNA upstream 189123 29112756 ~ 29120515 (-) False XLOC_002840
TCONS_00005268 mRNA upstream 189804 29113437 ~ 29120535 (-) True XLOC_002840
TCONS_00005262 other downstream 1266 28922135 ~ 28922251 (-) True XLOC_002837
TCONS_00005252 other downstream 468346 28454500 ~ 28455171 (-) True XLOC_002833
TCONS_00005251 other downstream 474649 28447906 ~ 28448868 (-) True XLOC_002832
TCONS_00005250 other downstream 479777 28442740 ~ 28443740 (-) True XLOC_002831
TCONS_00005248 other downstream 551032 28371209 ~ 28372485 (-) True XLOC_002827
TCONS_00005273 other upstream 784435 29708068 ~ 29708182 (-) True XLOC_002845
TCONS_00005276 other upstream 812553 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005286 other upstream 1607510 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005293 other upstream 2097723 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005308 other upstream 3618903 32542536 ~ 32610769 (-) False XLOC_002866