RNA id: TU2432479



Basic Information


Item Value
RNA id TU2432479
length 459
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G2127491
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30627648 ~ 30628703 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCGCTTCAGGCCCTTGAGAAGGTTGTATTCATCAGCCACTCCTGGTACTTCGCAGTCCCCTCCTCCAGGGTATCCAGCTCTCGGCTCAGCTTGTGCATCTGTTCACTGATGTCATCCATCTCGGCACACAGGCTTTTGTAGCTCGCCAGGTCGGAGTCAAACTCTTTCTTATACTGTCGTCGTTGCCTGTCTGATGTTATCTCAGGGTACATGCTGAAGAGACACATTACACAGGAATAAAGGAGACACAGGTCATTCCATTTAGATCAATGCTGCCATTTTATTGAACGCTTTCTTGAATGTAGAGAGCTTTGGAACAAAATGGCTTTCTGTCATGCTTTCCCACAAGCATATCtgacacagcacacacagcagATAACGGTTGGATACTGTCTGTTTTAATGTTTAATCTATCACGCCATCCCTCgttccatccattcatccatccatcttctCAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2432473 lncRNA downstream 12125 30615210 ~ 30615523 (-) True G2127485
TU2432464 lncRNA downstream 23941 30602522 ~ 30603707 (-) True G2127477
TU2432459 lncRNA downstream 35284 30588988 ~ 30592364 (-) True G2127473
TU2432456 lncRNA downstream 44386 30581005 ~ 30583262 (-) True G2127470
TU2432181 lncRNA downstream 116485 30510730 ~ 30511163 (-) True G2127226
TU2432480 lncRNA upstream 1239 30629942 ~ 30631485 (-) False LOC110508217
TU2432482 lncRNA upstream 4011 30632714 ~ 30632930 (-) True G2127494
TU2432485 lncRNA upstream 12928 30641631 ~ 30642015 (-) True G2127497
TU2432486 lncRNA upstream 13361 30642064 ~ 30642325 (-) True G2127498
TU2432488 lncRNA upstream 15631 30644334 ~ 30644614 (-) True G2127500
XM_021589831.2 mRNA downstream 180200 30442013 ~ 30447448 (-) False LOC110508919
XM_021589830.2 mRNA downstream 211004 30409271 ~ 30416644 (-) True angptl4
XM_021589828.2 mRNA downstream 226110 30399711 ~ 30401538 (-) False LOC110508917
XR_002471374.2 mRNA downstream 323236 30301087 ~ 30304412 (-) True LOC110508912
XR_002471372.2 mRNA downstream 348408 30273893 ~ 30279240 (-) True LOC110508910
XM_036967076.1 mRNA upstream 1239 30629942 ~ 30649835 (-) False LOC110508217
XM_036967077.1 mRNA upstream 1239 30629942 ~ 30649835 (-) False LOC110508217
XM_021589842.2 mRNA upstream 71839 30700542 ~ 30704777 (-) False LOC110508927
XM_021589843.2 mRNA upstream 76382 30705085 ~ 30706591 (-) False LOC110508928
XM_021589856.2 mRNA upstream 277176 30905879 ~ 30907975 (-) True ptger4c
TU2432439 other downstream 72461 30553589 ~ 30555187 (-) True G2127455
TU2432121 other downstream 192794 30434435 ~ 30434854 (-) True G2127177
TU2432085 other downstream 225841 30401213 ~ 30401807 (-) True LOC110508917
TU2430565 other downstream 1503906 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 1548904 29078039 ~ 29078744 (-) True G2125813
TU2432521 other upstream 76382 30705085 ~ 30706545 (-) True LOC110508928
TU2433286 other upstream 615388 31244091 ~ 31244692 (-) True G2128216
TU2433314 other upstream 690580 31319283 ~ 31320623 (-) False G2128242
TU2433312 other upstream 690638 31319341 ~ 31323364 (-) False G2128242
TU2433313 other upstream 690638 31319341 ~ 31323364 (-) True G2128242

Expression Profile