RNA id: TU2432488



Basic Information


Item Value
RNA id TU2432488
length 281
lncRNA type intronic
GC content 0.47
exon number 1
gene id G2127500
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30644334 ~ 30644614 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACATACAACTACACTGGCCGTATCATGGCTTGCCATCCATGCAGGCTCCATGCCGTGTCCTTTGTCATCTAATCTAGTGCCTGCGTGAGCGACTAGGATACAAGGAACAAGCCACCTGCGGCCCTGTGCACCAGTCTTTCACACACATCTCTGTCTATACCTCAACTGTAGTCGGAAGTCCCAGGTGATGAAGGACTGTATATGCAGTGGTTGGTTAGTTGTTTTTCCATAGGCCTTTGATTATAAATATTACATACCATCTGTATAGTAGTGGTTCCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2432486 lncRNA downstream 2009 30642064 ~ 30642325 (-) True G2127498
TU2432485 lncRNA downstream 2319 30641631 ~ 30642015 (-) True G2127497
TU2432482 lncRNA downstream 11404 30632714 ~ 30632930 (-) True G2127494
TU2432480 lncRNA downstream 12849 30629942 ~ 30631485 (-) False LOC110508217
TU2432479 lncRNA downstream 15631 30627648 ~ 30628703 (-) True G2127491
TU2432481 lncRNA upstream 3667 30648281 ~ 30649764 (-) True LOC110508217
TU2432491 lncRNA upstream 13893 30658507 ~ 30661740 (-) False G2127503
TU2432492 lncRNA upstream 15193 30659807 ~ 30661740 (-) True G2127503
TU2432499 lncRNA upstream 23109 30667723 ~ 30667989 (-) True G2127507
TU2432500 lncRNA upstream 24199 30668813 ~ 30669133 (-) True G2127508
XM_021589831.2 mRNA downstream 196886 30442013 ~ 30447448 (-) False LOC110508919
XM_021589830.2 mRNA downstream 227690 30409271 ~ 30416644 (-) True angptl4
XM_021589828.2 mRNA downstream 242796 30399711 ~ 30401538 (-) False LOC110508917
XR_002471374.2 mRNA downstream 339922 30301087 ~ 30304412 (-) True LOC110508912
XR_002471372.2 mRNA downstream 365094 30273893 ~ 30279240 (-) True LOC110508910
XM_021589842.2 mRNA upstream 55928 30700542 ~ 30704777 (-) False LOC110508927
XM_021589843.2 mRNA upstream 60471 30705085 ~ 30706591 (-) False LOC110508928
XM_021589856.2 mRNA upstream 261265 30905879 ~ 30907975 (-) True ptger4c
XM_021589860.2 mRNA upstream 334105 30978719 ~ 30980452 (-) False LOC110508937
XM_036966461.1 mRNA upstream 334369 30978983 ~ 30980313 (-) True LOC110508937
TU2432439 other downstream 89147 30553589 ~ 30555187 (-) True G2127455
TU2432121 other downstream 209480 30434435 ~ 30434854 (-) True G2127177
TU2432085 other downstream 242527 30401213 ~ 30401807 (-) True LOC110508917
TU2430565 other downstream 1520592 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 1565590 29078039 ~ 29078744 (-) True G2125813
TU2432521 other upstream 60471 30705085 ~ 30706545 (-) True LOC110508928
TU2433286 other upstream 599477 31244091 ~ 31244692 (-) True G2128216
TU2433314 other upstream 674669 31319283 ~ 31320623 (-) False G2128242
TU2433312 other upstream 674727 31319341 ~ 31323364 (-) False G2128242
TU2433313 other upstream 674727 31319341 ~ 31323364 (-) True G2128242

Expression Profile