RNA id: TU2432492



Basic Information


Item Value
RNA id TU2432492
length 1288
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G2127503
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30658507 ~ 30661740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGCCACAGTTGACCAGTGAGGTGTTGAGGTTATTCATCTTGTCCTTGAGAATGCCGATCTCGCCCTCCTTCACCTTCATCACCGTCTCCTGTAGCTCCTTGTCCCCCTGCAGCCTTCTGCTATCCATCAGCAGCCTCTCCGTCTCTCGGTCGTATTTCTCCTGGGTCTTCTGAAGCTTCTCGCGGTGCTCCAGGGCCATGGCACTGCGGTTGTAGCTGCACCAGTCGTAGACCTCCTTCAGCTGGTCTTTATCTGCCTGCAGTCTGGCACTGCAACCCTCAATCTCCAATATCTGAGAGCCCACCTTGTTCAGGTATTGCTGGAACTTGTTCTCCACCTCGCGGGACAGACCCGTGCAGTTGTTGCGGATCTGGTCCAGGTGGTGGAGCTGCTTCTCGCAGGTGAGCAGGAAGGGGCTGACATTGGGCAGAAGGTTGTCGATCTTCAACAGGAAGGCTTTAGAGACGTCGGAGATGCCGGCCAGGGATTGGACAAAGTCCTCCTTGCACTTCTTCCTGTAGCCCTCCAGTTGTCTCTGCAGGAAGGTCTTGTCCCTCCGGAGGAAGATGGCCTCCAGGGTCAGGGTGTCCCGGTCCATGGCTGtgttctccatctccatcctcatgAACTGCACCGTCTGACTGAAGTTGGAGCTCACTAGCTTTAGCAACTGCTCCAGCTGCTGGACCTGGTTTTCTTGCATATTATTGTTGTTGCCATTTGGGGGCATGGCCCTGAAGCATTGGCTCATTCTAAGTTGAATCTGACATATTCCCTTATCATTTTCACACTGAGTCTGTGGATATTAATAACAGACATGCATCAGCACCACATTTTGTCTACCAATAATAATTTGAGTGAAAATTTCACCTACAGATTTAGGATCTGCAGAaacagaaaatgtgaattattatgtgcatTATATACATCTTTTTTAATTATGGACATGTTTTGTAGAGGTTGATCCctttttctgcccctgaacaaggcagttaacctgctgttTCTAggacattgaaaataagaaattgttcttaaatggcttgcctagttaaataaattgaAGTACTACACTGTTGAATTTTCTGCTGTGAAGAACCATTTCCGcagcaacagggtgatcaaattaagatacggcATCTGTACATGCACATTATTGTTGACACTGTTGCAAAAGaagatatatatatctatagaaATGATGAACAGTCAAGTTTAAATCTGAATATACAGTGACTAGTGATTGTTAATGTTTATGACTGTAGGACCACTGTTTTAACCTTTTCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2432481 lncRNA downstream 10043 30648281 ~ 30649764 (-) True LOC110508217
TU2432488 lncRNA downstream 15193 30644334 ~ 30644614 (-) True G2127500
TU2432486 lncRNA downstream 17482 30642064 ~ 30642325 (-) True G2127498
TU2432485 lncRNA downstream 17792 30641631 ~ 30642015 (-) True G2127497
TU2432482 lncRNA downstream 26877 30632714 ~ 30632930 (-) True G2127494
TU2432499 lncRNA upstream 5983 30667723 ~ 30667989 (-) True G2127507
TU2432500 lncRNA upstream 7073 30668813 ~ 30669133 (-) True G2127508
TU2432502 lncRNA upstream 9088 30670828 ~ 30671191 (-) True G2127510
TU2432522 lncRNA upstream 38817 30700557 ~ 30704717 (-) True LOC110508927
TU2432541 lncRNA upstream 62392 30724132 ~ 30724541 (-) True G2127542
XM_036967076.1 mRNA downstream 9972 30629942 ~ 30649835 (-) False LOC110508217
XM_036967077.1 mRNA downstream 9972 30629942 ~ 30649835 (-) False LOC110508217
XM_021589831.2 mRNA downstream 212359 30442013 ~ 30447448 (-) False LOC110508919
XM_021589830.2 mRNA downstream 243163 30409271 ~ 30416644 (-) True angptl4
XM_021589828.2 mRNA downstream 258269 30399711 ~ 30401538 (-) False LOC110508917
XM_021589842.2 mRNA upstream 38802 30700542 ~ 30704777 (-) False LOC110508927
XM_021589843.2 mRNA upstream 43345 30705085 ~ 30706591 (-) False LOC110508928
XM_021589856.2 mRNA upstream 244139 30905879 ~ 30907975 (-) True ptger4c
XM_021589860.2 mRNA upstream 316979 30978719 ~ 30980452 (-) False LOC110508937
XM_036966461.1 mRNA upstream 317243 30978983 ~ 30980313 (-) True LOC110508937
TU2432439 other downstream 104620 30553589 ~ 30555187 (-) True G2127455
TU2432121 other downstream 224953 30434435 ~ 30434854 (-) True G2127177
TU2432085 other downstream 258000 30401213 ~ 30401807 (-) True LOC110508917
TU2430565 other downstream 1536065 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 1581063 29078039 ~ 29078744 (-) True G2125813
TU2432521 other upstream 43345 30705085 ~ 30706545 (-) True LOC110508928
TU2433286 other upstream 582351 31244091 ~ 31244692 (-) True G2128216
TU2433314 other upstream 657543 31319283 ~ 31320623 (-) False G2128242
TU2433312 other upstream 657601 31319341 ~ 31323364 (-) False G2128242
TU2433313 other upstream 657601 31319341 ~ 31323364 (-) True G2128242

Expression Profile