RNA id: TU2432500



Basic Information


Item Value
RNA id TU2432500
length 321
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G2127508
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30668813 ~ 30669133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGACACAGACTTGCCCAGTACTTATGCTAGCACCAGGTCATCCTTACCCAGCATTGCCATTGCTGACAGTGGACTACGAACTGCAGAGGACATCTGGTCATTTCCAAAAGCTGGTCCCCGAAAACCAGCTTGCGAAGAAGGAAAACGGCACAAAACAGCTATTCTAACTGACACACCAGTGAAGCAGGCCCTGGAAATGGAAAAGAATAACCCACCATCTAGCAAAAACAAGAAGCCAGCTAAAAAAAGAAAAATCGTAGAAGAGTTCATTAGATGAAGAAGAGTGCTTCTGCCTCGTCTGTGTGAAGACATCTTTAATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2432499 lncRNA downstream 824 30667723 ~ 30667989 (-) True G2127507
TU2432491 lncRNA downstream 7073 30658507 ~ 30661740 (-) False G2127503
TU2432492 lncRNA downstream 7073 30659807 ~ 30661740 (-) True G2127503
TU2432481 lncRNA downstream 19049 30648281 ~ 30649764 (-) True LOC110508217
TU2432488 lncRNA downstream 24199 30644334 ~ 30644614 (-) True G2127500
TU2432502 lncRNA upstream 1695 30670828 ~ 30671191 (-) True G2127510
TU2432522 lncRNA upstream 31424 30700557 ~ 30704717 (-) True LOC110508927
TU2432541 lncRNA upstream 54999 30724132 ~ 30724541 (-) True G2127542
TU2432557 lncRNA upstream 79815 30748948 ~ 30756441 (-) True G2127557
TU2432570 lncRNA upstream 119901 30789034 ~ 30804432 (-) False G2127570
XM_036967076.1 mRNA downstream 18978 30629942 ~ 30649835 (-) False LOC110508217
XM_036967077.1 mRNA downstream 18978 30629942 ~ 30649835 (-) False LOC110508217
XM_021589831.2 mRNA downstream 221365 30442013 ~ 30447448 (-) False LOC110508919
XM_021589830.2 mRNA downstream 252169 30409271 ~ 30416644 (-) True angptl4
XM_021589828.2 mRNA downstream 267275 30399711 ~ 30401538 (-) False LOC110508917
XM_021589842.2 mRNA upstream 31409 30700542 ~ 30704777 (-) False LOC110508927
XM_021589843.2 mRNA upstream 35952 30705085 ~ 30706591 (-) False LOC110508928
XM_021589856.2 mRNA upstream 236746 30905879 ~ 30907975 (-) True ptger4c
XM_021589860.2 mRNA upstream 309586 30978719 ~ 30980452 (-) False LOC110508937
XM_036966461.1 mRNA upstream 309850 30978983 ~ 30980313 (-) True LOC110508937
TU2432439 other downstream 113626 30553589 ~ 30555187 (-) True G2127455
TU2432121 other downstream 233959 30434435 ~ 30434854 (-) True G2127177
TU2432085 other downstream 267006 30401213 ~ 30401807 (-) True LOC110508917
TU2430565 other downstream 1545071 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 1590069 29078039 ~ 29078744 (-) True G2125813
TU2432521 other upstream 35952 30705085 ~ 30706545 (-) True LOC110508928
TU2433286 other upstream 574958 31244091 ~ 31244692 (-) True G2128216
TU2433314 other upstream 650150 31319283 ~ 31320623 (-) False G2128242
TU2433312 other upstream 650208 31319341 ~ 31323364 (-) False G2128242
TU2433313 other upstream 650208 31319341 ~ 31323364 (-) True G2128242

Expression Profile