RNA id: TU2432611


Basic Information

Item Value
RNA id TU2432611
length 593
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G2127609
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30874419 ~ 30875011 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccccatcttagctactgttgtatcaacatgttttgaccatgacagtttataatccagggttactccaagcagtttagtcacctcaacttgctaaaATTCCACCTTATTTATTACagtatttagttgaggtttaggatttagtgaatgatttgtaccaaatacaattattttagttttagaaatatttaggactaactcaTTCCTTGCCACCAATTCTGAAAGTAACTGCagttctttgttaagtgttgcagtgatttcactcgctCTAGTAGCTGAcctgtatagtgttgagtcatccgcatacatagacacactggctttactcaaggtCAGAGACATGTCCTTagtaaagatttttaaaaagtaaaGGGAGCTTCCTGAGTGgcgtagtggtctaaggcactgcatcacagtgttgCGGCGTCTCTACAGCCCCAGTGTGATCCAAGGCTGTGTCATtactggccgtgaccgggagtcccatagggcggcgcacaattggcccagcgttgttaggggagggtttggacggggggctttacttggcacATCGTGCTCTAGCAACTCTTTGTGGTGGGCCGGGCCCTATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2432585 lncRNA downstream 59685 30814233 ~ 30814734 (-) True G2127584
TU2432570 lncRNA downstream 69987 30789034 ~ 30804432 (-) False G2127570
TU2432571 lncRNA downstream 78438 30789034 ~ 30795981 (-) True G2127570
TU2432557 lncRNA downstream 117978 30748948 ~ 30756441 (-) True G2127557
TU2432541 lncRNA downstream 149878 30724132 ~ 30724541 (-) True G2127542
TU2432616 lncRNA upstream 8172 30883183 ~ 30883411 (-) True G2127614
TU2432617 lncRNA upstream 9454 30884465 ~ 30884785 (-) True G2127615
TU2432641 lncRNA upstream 49236 30924247 ~ 30931466 (-) True G2127637
TU2432678 lncRNA upstream 110062 30985073 ~ 30986114 (-) True G2127673
TU2432830 lncRNA upstream 120147 30995158 ~ 31136091 (-) False G2127817
XM_021589843.2 mRNA downstream 167828 30705085 ~ 30706591 (-) False LOC110508928
XM_021589842.2 mRNA downstream 169642 30700542 ~ 30704777 (-) False LOC110508927
XM_036967076.1 mRNA downstream 224584 30629942 ~ 30649835 (-) False LOC110508217
XM_036967077.1 mRNA downstream 224584 30629942 ~ 30649835 (-) False LOC110508217
XM_021589831.2 mRNA downstream 426971 30442013 ~ 30447448 (-) False LOC110508919
XM_021589856.2 mRNA upstream 30868 30905879 ~ 30907975 (-) True ptger4c
XM_021589860.2 mRNA upstream 103708 30978719 ~ 30980452 (-) False LOC110508937
XM_036966461.1 mRNA upstream 103972 30978983 ~ 30980313 (-) True LOC110508937
XM_021589861.2 mRNA upstream 120084 30995095 ~ 31004289 (-) True LOC110508938
XM_021589863.2 mRNA upstream 209304 31084315 ~ 31136167 (-) True LOC110508940
TU2432521 other downstream 167874 30705085 ~ 30706545 (-) True LOC110508928
TU2432439 other downstream 319232 30553589 ~ 30555187 (-) True G2127455
TU2432121 other downstream 439565 30434435 ~ 30434854 (-) True G2127177
TU2432085 other downstream 472612 30401213 ~ 30401807 (-) True LOC110508917
TU2430565 other downstream 1750677 29118684 ~ 29123742 (-) True LOC118944842
TU2433286 other upstream 369080 31244091 ~ 31244692 (-) True G2128216
TU2433314 other upstream 444272 31319283 ~ 31320623 (-) False G2128242
TU2433312 other upstream 444330 31319341 ~ 31323364 (-) False G2128242
TU2433313 other upstream 444330 31319341 ~ 31323364 (-) True G2128242
TU2433533 other upstream 836597 31711608 ~ 31737492 (-) True LOC110508968

Expression Profile