RNA id: TCONS_00055688


Basic Information

Item Value
RNA id TCONS_00055688
length 1794
RNA type mRNA
GC content 0.51
exon number 6
gene id XLOC_028725
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 18836791 ~ 18851365 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCAGTTTAAAACGTGTTACATATAAGCAAATGGTAACTTCGCCGGGCGCTTACATACGTTTGAGACAATGATATGCAGGGTACGGATGGGCCGTTAGGTGGTCCTGATGTCAGGAGGAGGATCCCAATCAAACTTCTTCCAAAGCAGGCCAGAAATAAACCTGCCCCACGACCCCAGAGACCAACGGGACGGTTACCATCCAAAAGCCATTCTGCAGAGGAAGGTAATGTTTTAACTTCAAGAAGGAGGACCGGTTTGATTGTGGTGTCAAATCAGGAGATGCTTTTGCAAGCCAGCGTCGCTTCCCACAGCAACTTTACTGGGATTACAAGctaaacTTGGTCGGTGAGAAGGATGAGACGCCTGTTCATTTCTGTGACAAATGTGGACTGCCGATTAAAACATACGGCCGCATGATCCCATGTAAGCACGTTTTCTGCTATGACTGTGCTTTACATCATGAGAGGAAGGGTGATAAGATGTGTCCAGGTCTAAATATGTACAGCTGTACAGACCCGGTCCAGCGGATTGAGCAGTGCCAACGTGGCTCTCTCTACATGTGCAGTATTGTTCAGGGTTGCAAACGGACCTATCTGTCCCAGAGGGACCTGCAGGCCCACATCAACCACCGGCACATGCGCTCTGGCAAGAGCTCCAGCAGCCGCTCTGACTCTCTCCACCTTCCTCCCTCTGAAGTGTCCGACCGCTTCCGCGTACCTCCACCTCACCTGCCCAAACCCCACGTACTCATCCCTCCACCTTTAGGCCATCCCGGACACGACCCATACGGCCCACCTCCTTCTGCTCATGATGACCTAAGACCTCAAGGACAACCACCTGGAGACATGGGCCCATCCCGGTCCCTCTCACAGGAGACCTTCCGAATCTCAACTGTCACCACTCGAAAACACAGCAACCTCATCACTGTTCCAATCCAAGATGATTCCGGCTCCGGACCATCCCGAGACCCGCTCTCTCAACCCGGAAATCCTCCCCCACCTCACCATCATCCTGGAGACTATACGGGTCAGCCTGTTGTGACCCATCCACACCACATGATGGCGCCACCTCAGCAGCATTACGGCCCGCCTCCACCTCCACCCATCAGTCACCCCATGCCACACCCGGGACAAGGCTCCAACACACCCCATATGGTCTTTAATCAAGCCCCTCCCCCTCTATCATCAGTCCCACCTCCGATAACCCCACCCCCCGGACACCTCATTGGTCAGATGCCACCATTTATGAACCATCCTCCACCCGGGCCACCCCCACAACATGGCGGACCCCCAGTTAATGCCCCGCCACCCCATCATTACAACCCTCAGTTTGCAGAGGACAAGAGCACACTCAGCCCGCCATTCAATCAGCCGGGAGGTTTGAGTCCTGGGATGTGGCCAGCCCCCAGAGGCCCCCCACCACGAATGCAGGGTCCCCCTCCGCAGGGACAGATGCCGGGGCCCCATCACCCAGATCAGGGCAGATACAGACCGTATTACCAGTAATAAtgtgtatttgattttttttttctttgttgttgcCGAATAAAGTGATTTAGTTTGTCAAGCTGGCAGGGATTCAATTGCATATTTTATAGTCTGAAAACTATTAACTGTATAGCAAAGATCAGTACTCACtgaatggtgttttaaaaatcttGTCATCGTCAGATATTCaaacatttactttttaataatcgAGCCCATACATGCTGCATTTTTAGGGGCTTTTGTTGATTGTTGAATGTGGTGTTTCTTGAATGTATTCACAATTAAATGTACAAATTCAATCTG

Function

GO:

id name namespace
GO:0030155 regulation of cell adhesion biological_process
GO:0016567 protein ubiquitination biological_process
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis
ko04131 Membrane trafficking
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040426-691 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and regulation of cell adhesion. Orthologous to several human genes including CBLL1 (Cbl proto-oncogene like 1).

Ensembl:

ensembl_id ENSDART00000015834

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058188 lncRNA downstream 121865 18712763 ~ 18714926 (-) True XLOC_028722
TCONS_00057349 lncRNA downstream 157099 18654682 ~ 18679692 (-) True XLOC_028721
TCONS_00055681 lncRNA downstream 230224 18605935 ~ 18606567 (-) True XLOC_028717
TCONS_00058187 lncRNA downstream 953861 17875071 ~ 17882930 (-) True XLOC_028707
TCONS_00058186 lncRNA downstream 953914 17875071 ~ 17882877 (-) False XLOC_028707
TCONS_00058189 lncRNA upstream 111563 18952482 ~ 18954075 (-) False XLOC_028727
TCONS_00058190 lncRNA upstream 111563 18952482 ~ 18964897 (-) False XLOC_028727
TCONS_00058191 lncRNA upstream 111563 18952482 ~ 18965119 (-) False XLOC_028727
TCONS_00058192 lncRNA upstream 111563 18952482 ~ 18965164 (-) True XLOC_028727
TCONS_00057350 lncRNA upstream 427466 19268385 ~ 19285442 (-) False XLOC_028731
TCONS_00055687 mRNA downstream 61243 18759289 ~ 18775548 (-) True XLOC_028724
TCONS_00055685 mRNA downstream 94685 18720785 ~ 18742106 (-) False XLOC_028723
TCONS_00055686 mRNA downstream 94849 18726048 ~ 18741942 (-) True XLOC_028723
TCONS_00055682 mRNA downstream 201786 18609539 ~ 18635005 (-) True XLOC_028718
TCONS_00055679 mRNA downstream 230218 18599556 ~ 18606573 (-) False XLOC_028717
TCONS_00055692 mRNA upstream 5705 18846624 ~ 18851365 (-) True XLOC_028725
TCONS_00055693 mRNA upstream 11902 18852821 ~ 18939338 (-) False XLOC_028726
TCONS_00055694 mRNA upstream 12556 18853475 ~ 18939338 (-) True XLOC_028726
TCONS_00055695 mRNA upstream 111563 18952482 ~ 18954001 (-) False XLOC_028727
TCONS_00055696 mRNA upstream 144610 18985529 ~ 19028861 (-) False XLOC_028728
TCONS_00055684 other downstream 182530 18654155 ~ 18654261 (-) True XLOC_028720
TCONS_00055683 other downstream 183550 18653148 ~ 18653241 (-) True XLOC_028719
TCONS_00055676 other downstream 230253 18597660 ~ 18606538 (-) False XLOC_028717
TCONS_00055674 other downstream 241651 18593830 ~ 18595140 (-) True XLOC_028716
TCONS_00055660 other downstream 647271 18189406 ~ 18189520 (-) True XLOC_028709
TCONS_00055699 other upstream 206547 19047466 ~ 19047555 (-) True XLOC_028730
TCONS_00055714 other upstream 1208405 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055724 other upstream 1335224 20176143 ~ 20177868 (-) False XLOC_028749
TCONS_00055737 other upstream 1555130 20396049 ~ 20396170 (-) True XLOC_028756
TCONS_00055751 other upstream 2810752 21651671 ~ 21652632 (-) True XLOC_028763

Expression Profile

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