RNA id: TCONS_00055691


Basic Information

Item Value
RNA id TCONS_00055691
length 813
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_028725
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 18836791 ~ 18851365 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCTCTGGCTGCTGTGGAGAGACTCAACCATGAAAACCCTGCTGCTATTGAGAGCTGTGTGAGTGCTGTAGGTTTCAGTGTTGGTGAATTTGCAGCTTTGGTATTTTCTGGTGCAATGAACTTCGCTGAAGCTTTGTTTGCGGTGAAGGTGAGGGCAGAGGCGATGCAGAAGGCCTCTGATCAAGTGTCCAGTGGCATGTTGTCTGTGATAGGTCGACCTCAAGCCCACTACAAACATGCCTGTGTCCGAGCTAGAGAGCACTGTGTTTCTCTTGGGATCCAAGACCCTGTGTGCTCCGTCGCCAACTACCTTTTTCCAGACGGGAGAGTCATAGCTGGACACAAAGAGGCTTTGGATTTTCTTCAAGAACGTTCCAAAGAGCTGAATTTCATGAGAACTCGACTGCTGCCGGTCAGCGGGGCCTTTCACACCTCACTGATGGAGGCGGCAGTTGAGCCTCTGAGAGACGTCCTCAGAAAGATTGAGGTGCGGCGGCCGGAGATCTCGGTGCACTCCAATGTGGACGGCAAACGTTACATGCATGACAAGCACATTCGCAATCAGCTGGCCAAACAATTGGTGTCTCCGGTGAAATGGGAGCAGACGCTGCATGAGATTTACCAAAGAGCCCAAGGACAGGAGTTTCCTCACACATATGAGACAATGATATGCAGGGTACGGATGGGCCGTTAGGTGGTCCTGATGTCAGGAGGAGGATCCCAATCAAACTTCTTCCAAAGCAGGCCAGAAATAAACCTGCCCCACGACCCCAGAGACCAACGGGACGGTTACCATCCAAAAGCCATTCTGC

Function

GO:

id name namespace
GO:0030155 regulation of cell adhesion biological_process
GO:0016567 protein ubiquitination biological_process
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis
ko04131 Membrane trafficking
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-041111-231 Predicted to enable [acyl-carrier-protein] S-malonyltransferase activity. Predicted to be involved in fatty acid biosynthetic process. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be active in mitochondrion. Orthologous to human MCAT (malonyl-CoA-acyl carrier protein transacylase).

Ensembl:

ensembl_id ENSDART00000151844

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058188 lncRNA downstream 124930 18712763 ~ 18714926 (-) True XLOC_028722
TCONS_00057349 lncRNA downstream 160164 18654682 ~ 18679692 (-) True XLOC_028721
TCONS_00055681 lncRNA downstream 233289 18605935 ~ 18606567 (-) True XLOC_028717
TCONS_00058187 lncRNA downstream 956926 17875071 ~ 17882930 (-) True XLOC_028707
TCONS_00058186 lncRNA downstream 956979 17875071 ~ 17882877 (-) False XLOC_028707
TCONS_00058189 lncRNA upstream 101683 18952482 ~ 18954075 (-) False XLOC_028727
TCONS_00058190 lncRNA upstream 101683 18952482 ~ 18964897 (-) False XLOC_028727
TCONS_00058191 lncRNA upstream 101683 18952482 ~ 18965119 (-) False XLOC_028727
TCONS_00058192 lncRNA upstream 101683 18952482 ~ 18965164 (-) True XLOC_028727
TCONS_00057350 lncRNA upstream 417586 19268385 ~ 19285442 (-) False XLOC_028731
TCONS_00055687 mRNA downstream 64308 18759289 ~ 18775548 (-) True XLOC_028724
TCONS_00055685 mRNA downstream 97750 18720785 ~ 18742106 (-) False XLOC_028723
TCONS_00055686 mRNA downstream 97914 18726048 ~ 18741942 (-) True XLOC_028723
TCONS_00055682 mRNA downstream 204851 18609539 ~ 18635005 (-) True XLOC_028718
TCONS_00055680 mRNA downstream 233325 18603010 ~ 18606531 (-) False XLOC_028717
TCONS_00055693 mRNA upstream 2022 18852821 ~ 18939338 (-) False XLOC_028726
TCONS_00055694 mRNA upstream 2676 18853475 ~ 18939338 (-) True XLOC_028726
TCONS_00055695 mRNA upstream 101683 18952482 ~ 18954001 (-) False XLOC_028727
TCONS_00055696 mRNA upstream 134730 18985529 ~ 19028861 (-) False XLOC_028728
TCONS_00055697 mRNA upstream 136574 18987373 ~ 19016396 (-) True XLOC_028728
TCONS_00055684 other downstream 185595 18654155 ~ 18654261 (-) True XLOC_028720
TCONS_00055683 other downstream 186615 18653148 ~ 18653241 (-) True XLOC_028719
TCONS_00055676 other downstream 233318 18597660 ~ 18606538 (-) False XLOC_028717
TCONS_00055674 other downstream 244716 18593830 ~ 18595140 (-) True XLOC_028716
TCONS_00055660 other downstream 650336 18189406 ~ 18189520 (-) True XLOC_028709
TCONS_00055699 other upstream 196667 19047466 ~ 19047555 (-) True XLOC_028730
TCONS_00055714 other upstream 1198525 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055724 other upstream 1325344 20176143 ~ 20177868 (-) False XLOC_028749
TCONS_00055737 other upstream 1545250 20396049 ~ 20396170 (-) True XLOC_028756
TCONS_00055751 other upstream 2800872 21651671 ~ 21652632 (-) True XLOC_028763

Expression Profile

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