RNA id: TU2433392


Basic Information

Item Value
RNA id TU2433392
length 2084
lncRNA type read_through
GC content 0.42
exon number 4
gene id G2128316
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31573484 ~ 31593171 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCGTTCTGTTCCTAGCAAATTCAGCAGTGTAAAGTGTGCAAAGCCTGGCTAGACTGTTGCATCCCACAACATGAATAGCTCATCATACAATTCATGTCCTCTACAGTGGTGCAGCAAAACAATCATTGGATTTATTGTCAATTTCTTCAGTGTAAAGTCCCAGAGATGATATGCTGTAGGTGTCAGACTGGATCTCACTTCAGCGGTATGAGCACCTACCACAGTACTCACTCCGACACAGTAGTGGAAAATGCATTACGACACTGAAAGATACATGGTTCTGTACATTGAGCAAAAGTTGATCATCTTAAGCGAATGGGTTGTTCCAAAGTTCCtttgcgtccctttgatattttaattgtgcacaaattacattttaaaagcctgttaaattaagtgccctttaatatagaccacatggaaaatGACATTCAGCATTTTGACTTGTAGTCTGATGCATCATACGGGCTACATTTCTGTATTTGGAAAGTTATACATCAAACTTTATtgttgacatgcaaaacattttgggactcaACAATagtctaatgaaacaaataccaagaCTTTGGGTGGAATTTTCTTAAGTTGATCATCTTCTCTAATGACATTTAATTAGGTTGCAGTAAAAAAGGGCACCTAATTGGTGGAACTACCCACATTAAATTTACTCACTACTCTTTGGAAGAAGAGCAGTCATTGTTTGATTGTACAAATGTGATACTGTGACTTGTACTTGGCAAGAAGGAAAGTCACTGTTTAGACAGCCATCAATCTTCCAGAAAATGTCAGGACTTCAAGCGCGTGTTCTTTCAACCTGAATTCTTCCAAGTCTCATggctccttcataatgtagatgTACAGTGTTGATAGAAAGTGCTTGCAGGATTGGGCAATGGGAGACAGCCAATGGGTCTGAGGAACGGCATCTAACTTCACCACACACCTCTTAATGTCCGTCTGAAAAAAGACAGGCATTTCCAACgtcaCCCATCCTCCGCGTTTCTTCAGCCAAGGGGCCAGGTTCTTGCGGACAAACTGGCCCAGGCTGTCCACTATGGTTTGGACCGTAGCTGGCTGGTTCTGTCGCACGCAGTCCACCGCCAGAGCCCCAGCCACGGCATACATAGATACCACCTTCCCCCATGTGATACCTATGGACGAGAGAGCGAGAATCACGGATCAGTTTGCTGATTGTGgttttccatggatttcaagtccggagactgagatggccattgcaaaatgttgatttttgtgGCCAATAAaccatttatttgcatattttgaTGTGTTaagccaagtttcagcctcctggtactgggtaaagttcacaATGCCGATGACCATAAGAGCTCTTTTTTTCCTGTCGTGACCAAAAGCTCCAGTTCAATGTGCCAATGCCATTTAGCAAACAGGCATTTATATTTGTTGGATGTCAAGAAAATACTCTTTGGCCGTGCACAGCAATAAGAATACatgagcagaaaataaccccatacctactgtaaaatagggtggtggatctttgatgttatggggctattttgcttccactggtcctggggcccttgttaaggtcaaaggcgtcatgaactttacccagtaccaggacattttagccaaaaacctggttgcctctgccaggcgGCTGAAACTCTTCCAGACAATAACCCCAGGAACGTGTCAAAACCTACAAAGACATGGTTAATTGGCaacaaaaatcaacattttgcattgACATCTCAGTCTCCACTCTCTGGacttgaaaacctgtggtttgaaatattgaaaatgtttgcaaatttttaTTATGGGTGTCAATTTCAGACCCCATTGTACATAATTTTAAATTGCTCTACTTCTACATGCTGCAGTCTAGTGCAGAGATAGTCCCAAGACACTGCATACTTCAGAAGTCAACTGTACAGTATGTCCATTatccagagagaaagagcaagacgGTTGCGGTCGCATCTGAGCTCTACATCAAAGAAATGGTCATTAGTTTCCTAGTAAAGCCGTTTGGCTGTCAGCCTTGTCATGACTGAGGCTTGAAGAACGGAAAAACCTGCACTCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433435 lncRNA downstream 1471 31570477 ~ 31572013 (-) True G2128353
TU2433426 lncRNA downstream 18755 31551762 ~ 31554729 (-) True G2128345
TU2433421 lncRNA downstream 28976 31542980 ~ 31544508 (-) True stk25b
TU2433418 lncRNA downstream 31977 31541291 ~ 31541507 (-) True G2128341
TU2433413 lncRNA downstream 49613 31523536 ~ 31523871 (-) True G2128336
TU2433484 lncRNA upstream 23197 31616368 ~ 31619060 (-) False G2128385
TU2433485 lncRNA upstream 23197 31616368 ~ 31619525 (-) True G2128385
TU2433486 lncRNA upstream 26569 31619740 ~ 31620149 (-) True G2128386
TU2433513 lncRNA upstream 45539 31638710 ~ 31643463 (-) False G2128399
TU2433514 lncRNA upstream 45539 31638710 ~ 31643463 (-) False G2128399
trnav-aac-156 mRNA downstream 12686 31560726 ~ 31560798 (-) True trnav-aac-156
XM_036966526.1 mRNA downstream 13105 31542758 ~ 31560379 (-) False stk25b
XM_036966527.1 mRNA downstream 13105 31542758 ~ 31560379 (-) False stk25b
trnap-ugg-71 mRNA downstream 51912 31521501 ~ 31521572 (-) True trnap-ugg-71
XM_021589889.2 mRNA downstream 62261 31508406 ~ 31511223 (-) True LOC110508960
NM_001160492.1 mRNA upstream 86252 31679423 ~ 31694153 (-) True nilt2
XM_036966696.1 mRNA upstream 115496 31708667 ~ 31715814 (-) False LOC110508968
NM_001160493.1 mRNA upstream 125518 31718689 ~ 31763048 (-) False nilt3
XM_021588580.2 mRNA upstream 158252 31751423 ~ 31763088 (-) True nilt3
XM_036966643.1 mRNA upstream 228971 31822142 ~ 31859100 (-) False LOC110508970
TU2433312 other downstream 250120 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 250120 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 252861 31319283 ~ 31320623 (-) False G2128242
TU2433286 other downstream 328792 31244091 ~ 31244692 (-) True G2128216
TU2432521 other downstream 866939 30705085 ~ 30706545 (-) True LOC110508928
TU2433533 other upstream 118437 31711608 ~ 31737492 (-) True LOC110508968
TU2433711 other upstream 289544 31882715 ~ 31883140 (-) True G2128568
TU2434105 other upstream 429887 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 429887 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 468878 32062049 ~ 32165022 (-) False asip2b

Expression Profile