RNA id: TU2433514


Basic Information

Item Value
RNA id TU2433514
length 4128
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G2128399
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31638710 ~ 31643463 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTGCATAAGTTCCACATTTATTTCACTTTATTCTGACAAATTGTTGACGTGTCCACAAACATTAGAAGACACTAGAACTCCAACACTCAAAAGATAACGTGAGCACTGAGATGATATCACAGGCCAGTTATTATGGAACGGGGGTTACATCTGTGCGATCGGACCCACCACAGCCAATCAGGTTCATTATTGACAAGACAAGAGCCAATCAAATGTCAAGTTCAATGCAGAGTCATTTAGGCGGGCGTTTAGTATACGGGTCTGTTTCTATACAAAGCTGCACTGAGGGGGATAGGGCGTCATTAGCAAgcagtgagggaaagagagagcagggtGAAGAAGAGGCAGATCCACATGCTTGGATCCGGGAAATGTAATGCTACATAAAAAAGCTGTCAAAGCAGTAACAGAATCCATCTGTATTTGTATATATAGCCGGCTCACGGAACTTCAAATGCATCGTTTTAACTTCTTCCTTGAGGATGGAACTTCATATATCCTAGCTGTAAGAAGAACCCTAGTTTTAAGAAGTATCCTAGCGTTAAGAAGTGCCCTAGTTTTAAGAAGCATCCTAGTTTTAAGGAGCATCTTAGTTTAAAGAAGTACCCTGGTTTTAAGAAGTATCCTAGTTTTAAGAAGTAGAGTTAAGAGTTAGTAGACGCTAAACGATAAAGCGACAATAGTACAGTTTCAAACAAAACAACATCTCCTTCTTTTGAGGGATAATATTGTAACCCCCAAACAATCTTATGCATTCTGTACATTTTTAATATGATAAATGATGATGTGATAAGTACAATAAATTATACTTGGATGACAATTCAATAGCCCTAATATTCCTTACTCACGTAATCCACCTCCAAATAGAAACAAGAATTCATAAATAAAGCTTTCTTTTCTTCCATTGGTTGAGCAGGCAAAATAGTGGCATACCAGTGTAcaccaaagtaaaaaaaaaaagttgcatACGACACACACCAAGATGACCACAAccgggtcggcaggtagcctagtagttaagagcgttgggccagtaaccgaaagattgctggtttgaatccccgagccaacaAGGTGAGAAAAAACCATCTGTCGATGTGACctggagcaaggcacttaaccttaattgctCATGTAAGTCGCTCAGGAaacgagtgtctgctaaatgactaaaatgttaaaaaatttaaaaaaaacagctcCACAATATGAAACCCAGAGATAGGTTGTAAATTTAATTAGTTCATAGTATATATCTTGTGATAGGTTGTATTTAAGTTTTAGCATTCTAGAAACAGAAACCAAAGAACCGTGTGATTTTCCACTGAAACCAATCAACTCTCAATTATTGCACTGCAGTATGTACGCAATATATTCCTTGTAGGAAGGATATAAGAAGATATGTTCATAATTGACGATATAAGCGCTTATTAATATTATTTGAGGAAAATCATGTGTGAGTATGCCATGTCTTGCATGTTGCTCCCTTGCTGTGGCTATCTGAGCATGCTCTGTAGGTTGGCAGGCCTGAGGCATGCATAAAAACCCAACACTGTGTGTTAGATGGgagaattgtgtttgaccaaaaaCACGAACCTCGCCATACAAACAAGGAACAACCGTAGGACATGATCCAATTGGCTGTCTGGCCATGGCTGGTCTGCTGCACTCACACATGATGTTGCTGTAAACACAACACTAACGCTTGGTTTTCAATAAAGCAAAAGGACGTACAAAAGCATAGAACACTCAGACTATGAGACAACAGGCCACTTCAGTTTGAAATTGTCCATCTCCTACGGCTGCTAGACCAAGGTGGTACTAAAGAGTCACTTTGCTTCAGTCGGCAGTGCCACCTTGATTCACTTTGGACTACTCTCGTTTCAGATAGCAGTTTGTGGTCATCTGGGTGTGAAAGAATAGTCACAGCGACAATAAACCACAGCCAAAGTCCCCAGGATGTGCGACTTCATAAcatctacatactgtataggtTTCTGACACAAGCATCAGGCTGTAAAACAGCTATACAAAAGCAAAGCAGAGGAGGTTAGCTGCTACTTTACACAAGAAGCTAGTGTAGCCTATAGACTGTACACATATTAGTCAAAATGGATAGAATCACATGGACACACGGCATCAATATTAGGTTCATAGCATCAGAGTAAATAAAAGCTTGCTTCAATACATGTCCCATTGAGCTAATGTGGTGGACGTCAACGATACTAAAGTGTGGATTGGATgaaaaacaggagagagagagagagcgaagtgGAGAAAGGGAGGCACTACCTGGTGCATAGCGATGCACTTTCAGACAACTCGACTGGTGGAAAAAAGGTCAAAAATATCCCAGTAACTTATCAATAGAGTATAATCACAGGGTTCTTTTAAATTATTCAATGTACTGCAACCCACCACCATAGAAGGCAAAGTAACCCACCACCATAGAAGGCAAAGTAACCCACCACCATAGAAGGCAAAGTAACCCACCACCATAGAAGGCAAAGTAACCCACCACCATAGAAGGCAAAGTAACCCACCACCATAGAAGGCAAAGTAACCCACCACCATAGAACACAAAGTAACCCACCACCATAGAACGCAAAGTAACCCACCACCATAGAACACAAAGTAACCCACCACCATAGAACGCAATAAACATCCTCTTGCTGGAGAGGAGCCATTCTTAGTGTATCCACGTGGAATATTTAACTTATAAACATACATTCAGGGCCAATAGCAGAATCGTAGATATTACATTAATATCTCACTAAAACCTAGGAGACATTTTTTCAAGTCTACATGACAGAGGATCTCTTCACTATTTTAAATAGATTGGACTGCTTTGGTTAAAAACAACTGAGTGAATGGGACAGACATCAACTCAAGAGAATATAATGCAAGAATAAAGTACCATGCGACAAAACTGGTCAGTGATCCCACACAAATAAATTGAACTGGTCAGTGATCCCACACAAATAAATTGAACTGGTCAGTGATCCCATACAAATAAATTAAACTGGTCAGTGATATATAAATGAAaactaaaataacaaataaataatgtATATACACAAAGAATATGTAAACGGTCAAGGACACATTGCTCTCCAGTGTGAGTCAGGCAGGTGGCGTATTATATTGCCTAATGCTCTACAAACATGTTACTATGAAATGTCAACACAGTGAACTCGCCATTCTCCAAGCATGGAAGGCAAAGAGTCATCCTATTGCCCTATCATATCCCCAGTACCCTAATCTGTCCATTACATTATCCAACTATTACAATACCCCACTTCTATCCCACTGTATACTGTCCAAAACCTGGATATATATTTACGTTCATCCTATACTGTCTAAAACCTTGGATAAAAACAGATACAACGACAACGAGTTCCAGTTTGCGACTGGCAGCCATTTCAACATGAGGTAAATGTGGATATGCTGTTTTAAcacgagaacacacacacagaaacagatatCTCTTATGAGAGGACTAGAAAAGGGAATATACCATGTCACCATTAGTATTTTTCTTATCAGTCTACAGTGTTTATAAGAAATACATGAGTGGTTTTGATCTGGGGTTTAATGTACAGTCAGAGTGGGGCGGTAGTAAGTAGCAGGCCATTGAAACTGATAACAACTTGGACTAAGACTTATACACTATACCGTTTCTCTTTGTTTGGATAAACCCTATGGGGACTGTTAGCATGTTAGATAACGGTAAAGTTTACGTGCACATGACAATGGGGCGTGTCACAACCAGGCACAATACAGCCAGCAGGGGTAAGCCCCACTACACAGGGTCGGGTTGTTAGTTAAGTCTTACATGGGTATTAAGGGTGTTTAATGGGTAGTTTAAACTGTGCGTGTTCCAGGTAACCAGGAAGAGGCTTCAAATAGGGCATCAGCTGGGATGGTTTTAAGTGCAGTTTGGGGAAGTATCAGCGACAGGATGGAGCACTGTTAGGACAGGGAGAGCTGTTTAGATGAGCTGTATACAGGAGAGGGTCAGTGGAGCTTTGAgattgtgtttttgttttcttttttctccccccctcccgtatgtgttcctctctctcacatCCTTGGGCCTGACTTTCTTCTGGAGAGCTTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433486 lncRNA downstream 18561 31619740 ~ 31620149 (-) True G2128386
TU2433485 lncRNA downstream 19185 31616368 ~ 31619525 (-) True G2128385
TU2433484 lncRNA downstream 19650 31616368 ~ 31619060 (-) False G2128385
TU2433392 lncRNA downstream 45539 31573484 ~ 31593171 (-) True G2128316
TU2433435 lncRNA downstream 66697 31570477 ~ 31572013 (-) True G2128353
TU2433534 lncRNA upstream 25252 31668715 ~ 31669787 (-) True G2128418
TU2433542 lncRNA upstream 37799 31681262 ~ 31730910 (-) False G2128426
TU2433543 lncRNA upstream 40730 31684193 ~ 31735545 (-) False G2128426
TU2433544 lncRNA upstream 40730 31684193 ~ 31730910 (-) True G2128426
TU2433552 lncRNA upstream 66827 31710290 ~ 31761665 (-) False LOC110508968
XM_021589895.2 mRNA downstream 54514 31576878 ~ 31584196 (-) True thap4
trnav-aac-156 mRNA downstream 77912 31560726 ~ 31560798 (-) True trnav-aac-156
XM_036966526.1 mRNA downstream 78331 31542758 ~ 31560379 (-) False stk25b
XM_036966527.1 mRNA downstream 78331 31542758 ~ 31560379 (-) False stk25b
trnap-ugg-71 mRNA downstream 117138 31521501 ~ 31521572 (-) True trnap-ugg-71
NM_001160492.1 mRNA upstream 35960 31679423 ~ 31694153 (-) True nilt2
XM_036966696.1 mRNA upstream 65204 31708667 ~ 31715814 (-) False LOC110508968
NM_001160493.1 mRNA upstream 75226 31718689 ~ 31763048 (-) False nilt3
XM_021588580.2 mRNA upstream 107960 31751423 ~ 31763088 (-) True nilt3
XM_036966643.1 mRNA upstream 178679 31822142 ~ 31859100 (-) False LOC110508970
TU2433312 other downstream 315346 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 315346 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 318087 31319283 ~ 31320623 (-) False G2128242
TU2433286 other downstream 394018 31244091 ~ 31244692 (-) True G2128216
TU2432521 other downstream 932165 30705085 ~ 30706545 (-) True LOC110508928
TU2433533 other upstream 68145 31711608 ~ 31737492 (-) True LOC110508968
TU2433711 other upstream 239252 31882715 ~ 31883140 (-) True G2128568
TU2434105 other upstream 379595 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 379595 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 418586 32062049 ~ 32165022 (-) False asip2b

Expression Profile