RNA id: TU2433725


Basic Information

Item Value
RNA id TU2433725
length 1176
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G2128582
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31895696 ~ 31898461 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCTCTCGTTGACGATGCAGTTTCCATGAATCAGCACGGCGTCACAGGGCATGATCATTCCATTGGACGGGATGACGATGACATCACCGGGGACCAGCTCTGTGGACATGGCCTCCTCGACATCTGTGTTCAACACAACACCacaggggtatactacaaagcaggagcCAGCTAACTGTgataaacaaccagaaataactatGGATTTTCTGTTTCATTAAGAAAGctaaactaaataaataaaaaaggtatATAATAATATTtaggcaagttagctggctaactccttGTTCCggtttgtagtatacccctctggtCAGATGACGAACCCATAACAAGCAGCATAGTCCATAAGGAGGACTTGTTTTTCCTTCAcaatcaacaaaaaatgtaaataaataaataaaaagatgtAATAAAAGATGTAGGATGAAATTATACCCATTATCAAATCATCATCAAGTACACATTGTCGACCATTATCAAATACACATTATCAATGTAATACTTCAAAAGTGTAACCGAAACCTTGGAAAGGAGGAAGTCACTAATAAAATGCAATAATAGATGAATAATAATGAAtacagtacattaatctctaTAGTTACAAACCTAGAGTCCCTCTGCACACTGAGACACGTACGACACTGTGTGTCGCCACCATGTCATGCAGCATGATGTATTGCTGTGAGCAGAGAAAAAGGGGAATCCATTAAAAGAAACATAAGCTAAACAACACAGAAGTCATctattaaaaacaacaacaaaaatatgttttaagtGAGAATTGGTTTGTACCCGAAAAAAGGAAATTCACGAGCACCACAATGCCTTTTCGACCCATTCTCTACCacggttttccagcacacagctttgacctactacagtagctatgttggtattATACttcaaactatgtgtaggcaggttgcttaggattcaaccTTCTCCTATATGATGGTAGGGAGATTTGAAGTTAAcgctagccccccccccccaataataaCTATTCTGTCATTGCCAAGGAACGAGTAACATTTAACTTCGATAACTCTGATTGAGAGGCAACATGGCCGCCACTTCCGCTACATGAGGAAGTGCTTAGTCTAGGACGACCACCCACCTTCTTGACGGTGTACAGCGAGGTAGCTATGGATATGACAGACATGAAGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433720 lncRNA downstream 1113 31893543 ~ 31894583 (-) True G2128577
TU2433717 lncRNA downstream 6432 31889049 ~ 31889264 (-) True G2128574
TU2433712 lncRNA downstream 11499 31883579 ~ 31884197 (-) True G2128569
TU2433699 lncRNA downstream 16187 31877392 ~ 31879509 (-) True G2128556
TU2433673 lncRNA downstream 94381 31795433 ~ 31801315 (-) True G2128536
TU2433726 lncRNA upstream 272 31898733 ~ 31898993 (-) True G2128583
TU2433727 lncRNA upstream 1201 31899662 ~ 31899898 (-) True G2128584
TU2433728 lncRNA upstream 1634 31900095 ~ 31900384 (-) True G2128585
TU2433730 lncRNA upstream 2377 31900838 ~ 31901045 (-) True G2128587
TU2433732 lncRNA upstream 6811 31905272 ~ 31905915 (-) True G2128589
XM_036966643.1 mRNA downstream 36596 31822142 ~ 31859100 (-) False LOC110508970
XM_036966644.1 mRNA downstream 36596 31822142 ~ 31859100 (-) False LOC110508970
XM_036966646.1 mRNA downstream 36596 31822142 ~ 31859100 (-) False LOC110508970
XM_036966647.1 mRNA downstream 36596 31822142 ~ 31859100 (-) True LOC110508970
XM_021588580.2 mRNA downstream 132608 31751423 ~ 31763088 (-) True nilt3
XM_021589911.2 mRNA upstream 53738 31952199 ~ 31954935 (-) True LOC110508975
XR_002471379.2 mRNA upstream 62040 31960501 ~ 31967067 (-) False LOC110508977
XR_002471380.2 mRNA upstream 102794 32001255 ~ 32006090 (-) False LOC110508978
LOC110508982 mRNA upstream 124596 32023057 ~ 32028435 (-) False LOC110508982
XM_036966563.1 mRNA upstream 136362 32034823 ~ 32051914 (-) False LOC110508983
TU2433711 other downstream 12556 31882715 ~ 31883140 (-) True G2128568
TU2433533 other downstream 158204 31711608 ~ 31737492 (-) True LOC110508968
TU2433312 other downstream 572332 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 572332 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 575073 31319283 ~ 31320623 (-) False G2128242
TU2434105 other upstream 124597 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 124597 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 163588 32062049 ~ 32165022 (-) False asip2b
TU2434159 other upstream 258571 32157032 ~ 32165022 (-) False asip2b
TU2434160 other upstream 258571 32157032 ~ 32165022 (-) False asip2b

Expression Profile