RNA id: TU2433732


Basic Information

Item Value
RNA id TU2433732
length 644
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G2128589
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31905272 ~ 31905915 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTAGTGCCAATTGATCGTAGCAGGCTGGATGTCTTTGGGAGGTGTGGCGTCTGCTACGATGACCCTCTCATGAGGGGTTATCATCCCACAGTCTCTGGCTACTGATATAGCGGTTAGCATATTATCGCCTACAGTCAGACAGTGAGAGATGACAACAAGATGCAAAACAAgttaaatgactaacatgtcaaATGTAAGACGCTCAACATTTTCATTGTTATCAGTGTAGGGGTGGCAGCTAGTCGTAGTTAGCTTAGTCATTCCAAATGACATAACAGCAGTTTATATGGCTTTGCAGTACTGATGGTTGCTTCAGTGTAAAGTGCTGGTGGGACTATGGTATTGAATATTGGTAAGATTGGTACATGCTACAGTACAACACGGCACTCGCAAACCTAAACAATCTCCCAGAATGCTGAcaacatgttgtattgtagatgaaGACTGTATATGATTGGCTTATTCACCTGTAACCATCACAGTGCGGATGTTTGCATGTCGCAGGTCTTTTAAAACCCCAGAAGTCTCTTCCTTTAGCTTGTTTTGCATGATTATGAGCCCAAGGAACTCCATATTGGTCTCTATGAGATCTCTGACAGGTATAGAAAACAGATCAATCAATTAAAGACTAAGAATTTATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433730 lncRNA downstream 4227 31900838 ~ 31901045 (-) True G2128587
TU2433728 lncRNA downstream 4888 31900095 ~ 31900384 (-) True G2128585
TU2433727 lncRNA downstream 5374 31899662 ~ 31899898 (-) True G2128584
TU2433726 lncRNA downstream 6279 31898733 ~ 31898993 (-) True G2128583
TU2433725 lncRNA downstream 6811 31895696 ~ 31898461 (-) True G2128582
TU2433733 lncRNA upstream 1336 31907251 ~ 31907514 (-) True G2128590
TU2433734 lncRNA upstream 1666 31907581 ~ 31907878 (-) True G2128591
TU2433735 lncRNA upstream 2579 31908494 ~ 31909145 (-) True G2128592
TU2433736 lncRNA upstream 3557 31909472 ~ 31910558 (-) True G2128593
TU2433722 lncRNA upstream 12101 31918016 ~ 31921125 (-) True G2128579
XM_036966643.1 mRNA downstream 46172 31822142 ~ 31859100 (-) False LOC110508970
XM_036966644.1 mRNA downstream 46172 31822142 ~ 31859100 (-) False LOC110508970
XM_036966646.1 mRNA downstream 46172 31822142 ~ 31859100 (-) False LOC110508970
XM_036966647.1 mRNA downstream 46172 31822142 ~ 31859100 (-) True LOC110508970
XM_021588580.2 mRNA downstream 142184 31751423 ~ 31763088 (-) True nilt3
XM_021589911.2 mRNA upstream 46284 31952199 ~ 31954935 (-) True LOC110508975
XR_002471379.2 mRNA upstream 54586 31960501 ~ 31967067 (-) False LOC110508977
XR_002471380.2 mRNA upstream 95340 32001255 ~ 32006090 (-) False LOC110508978
LOC110508982 mRNA upstream 117142 32023057 ~ 32028435 (-) False LOC110508982
XM_036966563.1 mRNA upstream 128908 32034823 ~ 32051914 (-) False LOC110508983
TU2433711 other downstream 22132 31882715 ~ 31883140 (-) True G2128568
TU2433533 other downstream 167780 31711608 ~ 31737492 (-) True LOC110508968
TU2433312 other downstream 581908 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 581908 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 584649 31319283 ~ 31320623 (-) False G2128242
TU2434105 other upstream 117143 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 117143 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 156134 32062049 ~ 32165022 (-) False asip2b
TU2434159 other upstream 251117 32157032 ~ 32165022 (-) False asip2b
TU2434160 other upstream 251117 32157032 ~ 32165022 (-) False asip2b

Expression Profile