RNA id: TU2433736


Basic Information

Item Value
RNA id TU2433736
length 1087
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G2128593
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31909472 ~ 31910558 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCTGGAGACAGGTTTCTATTACTCACTTGTGAAGGCAATGATCAGAATGATAGCAACGTCAATGAAGAGGAACTGGAAGTCTCCCAGGTTGCTGAGGATCTAGAACATGGAGACACAACCCCTTAAAACTGATCTCAAACCAGTCATTACCATATTCATCAGTTGATCATAGCAGCTACACTTATCTCAAACTAGCCGTTATCATGTTTTTCAGTTGAGCTTAGTAGCtctactgatctgggaccagtacTCACAGAGTAGAGGAGCGTGACACTGAGGTACTGGATGATGCTGTACAGGGCCATGAACTTGAACACACAGAAGGAGGTGATGAGAGcagctctcccctctctgtggaGAAACAACAGGCCATCATTCAGACTGGCAACTCTGAGACTACTTTGATATAGCACTTCAAATACTTCCAACAGATACATTTTATTCCACAGACAGATATTTGACAGGTACTTGTGCCAAGTAATTTATAACAACTGTATAAGGACTGTCAAATAAAGAGACATTTGACATTGTTGATGAAAAGGGATGCTATTTCCTCTATAGGTTTATTCCAAGATTCCTGCCTTCCAGGGAGTTGTCTctggccactgtgcttctgccTTTGCGTTGCTTGCTCtttagggttttaggcttgggttactgtaaagcaatGTGACAACtgatgatgtaaaaagggctttataaaaaacATCTGATTGATGCTACAGTACCTAATGAGGTTGGGCACACAGGAAATGTTGGCCGTGGAGGAGGTGAAGGGGGAGGCGACCGAGGCCTCCAGCTCTGACAGAGAGATCCCACTGTGAGCTCTCTTTAGGGCCTGGAGAtagcagagggaggaggggaggtcaCTCGATGTGCTCCAAATAATTGCTTGGAACATTGGTTGTGGGTTTAATTCCCATGGAGGCCAGGTGAAAGGTAATAGCCTGTCtgctaaaatacattttatagcAGAGTTAAAAGAGGGCGGCATTACAGGAAAGAGACGTCTGTTCCTAATAGTGGCATCAGGAGAATACTGCCCACTTATGTCATACTGCTTGAACTGTGTACAGTTTGAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433735 lncRNA downstream 327 31908494 ~ 31909145 (-) True G2128592
TU2433734 lncRNA downstream 1594 31907581 ~ 31907878 (-) True G2128591
TU2433733 lncRNA downstream 1958 31907251 ~ 31907514 (-) True G2128590
TU2433732 lncRNA downstream 3557 31905272 ~ 31905915 (-) True G2128589
TU2433730 lncRNA downstream 8427 31900838 ~ 31901045 (-) True G2128587
TU2433722 lncRNA upstream 7458 31918016 ~ 31921125 (-) True G2128579
TU2433724 lncRNA upstream 10700 31921258 ~ 31921736 (-) True G2128581
TU2433723 lncRNA upstream 11534 31922092 ~ 31922692 (-) True G2128580
TU2433752 lncRNA upstream 24470 31935028 ~ 31935644 (-) True G2128608
TU2434071 lncRNA upstream 47726 31958284 ~ 31963350 (-) True LOC110508977
XM_036966643.1 mRNA downstream 50372 31822142 ~ 31859100 (-) False LOC110508970
XM_036966644.1 mRNA downstream 50372 31822142 ~ 31859100 (-) False LOC110508970
XM_036966646.1 mRNA downstream 50372 31822142 ~ 31859100 (-) False LOC110508970
XM_036966647.1 mRNA downstream 50372 31822142 ~ 31859100 (-) True LOC110508970
XM_021588580.2 mRNA downstream 146384 31751423 ~ 31763088 (-) True nilt3
XM_021589911.2 mRNA upstream 41641 31952199 ~ 31954935 (-) True LOC110508975
XR_002471379.2 mRNA upstream 49943 31960501 ~ 31967067 (-) False LOC110508977
XR_002471380.2 mRNA upstream 90697 32001255 ~ 32006090 (-) False LOC110508978
LOC110508982 mRNA upstream 112499 32023057 ~ 32028435 (-) False LOC110508982
XM_036966563.1 mRNA upstream 124265 32034823 ~ 32051914 (-) False LOC110508983
TU2433711 other downstream 26332 31882715 ~ 31883140 (-) True G2128568
TU2433533 other downstream 171980 31711608 ~ 31737492 (-) True LOC110508968
TU2433312 other downstream 586108 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 586108 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 588849 31319283 ~ 31320623 (-) False G2128242
TU2434105 other upstream 112500 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 112500 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 151491 32062049 ~ 32165022 (-) False asip2b
TU2434159 other upstream 246474 32157032 ~ 32165022 (-) False asip2b
TU2434160 other upstream 246474 32157032 ~ 32165022 (-) False asip2b

Expression Profile