RNA id: TU2435353



Basic Information


Item Value
RNA id TU2435353
length 402
lncRNA type intronic
GC content 0.45
exon number 2
gene id G2129919
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32505336 ~ 32505871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAAGAAGGATGGAGAGTTTGCATTAATGAGCTGTTGCAGAGAGCAACAGCATACAAATATTGAGAGAGGGCAATCAGAGGGAGAATGAGATAGTGAAAGGGGACGAGATAGTGAGGCGAGAAAGCAAGATAGTGGGAGAGAGAATCCTTTTGGAAGGTTTGTAAAGGAGAAATAGattgtgagggagagagagagagtgtgtgagagagactttTTGGAGGGTTTGTAAAGGAGAAAGAGCttttgagggggagagagagagtgtgtgagagagactctTTTTGGAGGGTTTGTAAAGGAGAAAGAGAttttgagggggagagagagagtgtgtgagagagactTTTTGGAGGGTTTGTAAAGGAGAAAGAGAttttgagggggagagagagagtgtgtgag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2434392 lncRNA downstream 79895 32379801 ~ 32425441 (-) True G2129099
TU2434400 lncRNA downstream 102604 32399453 ~ 32402732 (-) True G2129103
TU2434388 lncRNA downstream 130241 32374665 ~ 32375095 (-) True G2129095
TU2434343 lncRNA downstream 143757 32361342 ~ 32361579 (-) True G2129060
TU2434300 lncRNA downstream 193966 32310876 ~ 32311370 (-) True G2129017
TU2435437 lncRNA upstream 59134 32565005 ~ 32565208 (-) True G2129998
TU2435506 lncRNA upstream 213366 32719237 ~ 32720885 (-) True G2130055
TU2435509 lncRNA upstream 218100 32723971 ~ 32724470 (-) True G2130058
TU2435511 lncRNA upstream 219423 32725294 ~ 32725766 (-) True G2130060
TU2435392 lncRNA upstream 221906 32727777 ~ 32732290 (-) True G2129953
XM_021589933.2 mRNA downstream 172917 32312071 ~ 32332419 (-) False LOC110509001
XM_036966022.1 mRNA downstream 172917 32312071 ~ 32332419 (-) False LOC110509001
XM_036966023.1 mRNA downstream 172917 32312071 ~ 32332419 (-) False LOC110509001
XR_005040196.1 mRNA downstream 172917 32312071 ~ 32332419 (-) True LOC110509001
XM_021589932.2 mRNA downstream 213143 32280903 ~ 32292193 (-) True LOC110509000
XM_036966767.1 mRNA upstream 92557 32598428 ~ 32614505 (-) False cpdp
XM_036966766.1 mRNA upstream 92557 32598428 ~ 32614539 (-) True cpdp
XM_036966770.1 mRNA upstream 122429 32628300 ~ 32655437 (-) False LOC110509006
XM_036966769.1 mRNA upstream 122429 32628300 ~ 32655443 (-) True LOC110509006
XM_021589944.2 mRNA upstream 194167 32700038 ~ 32704296 (-) True ahsg2
TU2434271 other downstream 275122 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 340314 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 340314 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 340314 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 476778 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 892676 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1534335 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 1535567 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 1535698 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 1538819 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile