RNA id: TU2435403


Basic Information

Item Value
RNA id TU2435403
length 4205
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G2129964
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32830017 ~ 32835141 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACACATAACGTATTTTGTTCCAGGCCTTGGAAATACAACTCGCAATCCCCTAAAAAACATCGCTCCCCATGTGTGGGGTCTCTCACCGCAAGCCGTGGCCCAGAGCCCAAGGCTTTTCATCCTGTTGCTGACCAGCTCGTCCAGCTCCTGTCTCTCCGAGCGTCTGGCCCTCAGACCCCGCTGGCCCCCCCTCTGAGCCCCCCGCTGGTTCCCTCGAGTCCCCCTCCGGCTCAGCTTCCGCGCCCACTGCACGCTCTTCCTCCTCAGCAGGGGAGCCTTCCCGTCCGATGGGTCGCTGGAGGTGGAGGTGTGGTGGAGCCCTCCGGCCACAGGGGGGAGTTCTCGGTCTCTCTGCTCCTTGGGGTCGTCTAAGTCCTCCACGCACCCGAGAGCTGTGACTGAGTACGATCAAAACACAATGCCATATACATGAATGAAGTCTATGGTGTGTCTATAGTCAAATAGGCTCAAATGAAACGACCCAGAACAAAGCGAATAATCAAGAGTGAGGCCAGAGAATGTATAAGTTGATTTGACAATGATTTCTTCCTGATATAACCACCAGTGGCAAGTCTCGACGTGGTTTATCAAGCACAATTTAACCAAGACACATTACAGAGGAAGAAAACCTACCTCATCTGCACAAAAAGTTGATTCAGTCTGACAAAATAAATCTACTGTTTTTCGCGAATCATGGAATCCCACAAATAGGAATCATGGAATCACACAAATAGGAATCATGGAATCACACAAATAGGAGTCGTGGAATCACACAAATAGGAGTCGTGGAATCACACAAATAGGAATCGTGGAATCACACAAATAGGAATCATGGAATCACACAAATTGGGCTGAACTTACTTGGGAGGATGGCTCGCATTGCTTATGATGGAGAATGAAAAGAAAAGAGATGAATGACATTAATGTTGCTTACTGTGTTGTAACATGCTTAAATAACCATGAAAGCATACAGACTAAACATTTATACGTAACAaatgagaaaaaaagaagaaaaacacacacacacaacagaatgACAGCATAATCAATGCCGCTGTTATATGTAATTAACACAAGAAAAAAGAAAACACGAAACTGGGATTTCACAGCCAAACAAATGAATGTCAACAATGTTAAAACAGCCTTGCGGTCTAGAGGGCACCTCCTCAGAGGAATCTGCTGTCTGGGACTCAGTCCTGTAGATGCTGATAGAGCCTTCCATATGTCTGGATCCACAGGTCATCCTCAGAGATCTGCATCTAAAAGGTCATTTCAAAGTCCATTTCTCTACAGGAGGAACAACTGTACAGTGATTTTAAATGACTGTGGAGTCACTTTTACCTGTCAGTGTAAGGATTAGGACAGGCAAGTAAAGGCTGCTGTGCTGTCACACATAGGACCACTGTACAGTACAACGGGTgaatctcagtagtctaaagacGCCTCCTCTCTTTGTCTTCTTTCTCCTTCTGCCTGAGACGTGGAGAGGAAACCACTTTTGACCATTGAGATGCACCCAGAGAGTAACTCACAGAGCAGAGGAATCCAGAGCCTGGGGTGGTATCCAGGCCCAGCAGCAGCCTGGTGATGGAGATAATATAGTCTTTGACAAACGACTGGGCtggcagacaggacaggacaggacaggacaggacatagaAGGGTCATTCCTGGTCATCCAGAAATCAACACATTCCAATTCGACTAGCATTATATTATATGGACATTGGGATGCATATGAACACATTGTGACAGAAAAAATAATGTTACATGTTTTAACATAAAATATCTGGGAGGTACAAAATTGTGTAATAAATAACTATAATTACTACAGTACATGCCCTTAAGCAAAGTCAGTCTGTGCCACAGAGATAACCTTGTTTAAATAAGCCTTGGTAGGCTAATTAAAGAGATTAGCCTCTGTAGGCCAATTAAATAACAATATTATTAAagaggtatcctagtggttagagcgttggactagtaaccgaaaagttgcaagatcgaatctccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggatgtcactgaaaataagaatttgttcttaactgacttgcctagttaaataaagttttttttaaaggatAATTAAAGAGATTAGCCTCGGTAGGCTAATTAAAGAGATTACCTTCTGTATACAGTACAGAACAACCTCTacttaaaaatgtatgtagttaaGCAGTAAGTAACATTCTTATCTTCTCTGCTGCTGTATAGAACAGGTGGGTCCTGCTGTATAGAACAGGTGGGTCCTGCTGTACAGAACAGGTGGGTCCAGCTGTATAAAACAGGTGGATCCTGCTGTACATAACAGgtgggtcctgctgtacataACAGGTGGGTCCAGCTGTACAGAACAGGTGGGTCCTGCTGTATAGAACAGGTGGGTTGTGCTGTACAGAACAGGTGGGTCCTGCTGTACAGAACAGGTGGGTCCTGCTGTACAGAACAGGTGGGTCCTGCTGTGCAGAACAGGTGGGTCGTGCTGTACAGAACAGATGGGTCCAGCTGTACAGAACAGGTGGGTCCTGCTGTTCAGAACAGGTGGGTCCTGCTGTACAGAACAGGTGGGTCCAGCTGTACAGAACAGGTGGATCATACTGTACAGAACAGGTGGATCATACTGTACAAAACAGGTGGATCATACTGTACAGAACAGGTGGATCATACTGTACAAAACAGGTGGGTCCTGCTGTACAGAACAGGTGGGTCCAGCTGTACAGAACAGGTGGGTCCTGCTGTAGAGAACAGGTGGGTCCTGCTGTACAGAACAGGTGGGTCCTGCTGTACAAAACAGGTGGGTCCTGCTGTACAGAACAGGTGGATCCTGCTGTACAGAACAGGTGGGTCCTGCTGTACAGAACAGGTCAATGTCATCACATTGAATTATTTGGACGAGATAAAGTGGAATACATtttattcaaccagtttttgcccagtgggatgttaGGGCAGCATTCTGCAAACCTTTCCTTGAATAAACCAGTCTATTGCATTACAGTATAACCGGATTCAACTGGTCACCTAATCATCAAGTCCTTCGGGTGTTACAACTGGAACGGATCAAATGGGGGTGCTCAAGAAGAGGTTAGGATATTTGAAAGAGAGAGACCGCCACCTGGTGGTCGATACTGATACGAGATGGAAGATGCACCGCAACAGGATATTTGAAAGAGAGAGACCGCCACCTGGTGGTCGATACTGATACGAGATGGAAGATGCACCGCAACAGGATATTTGAAAGAGAGAGACCGCCACCTGGTGGTCGATACTGATACGAGGTGGAAGATGCACCGCAACGGGAACGATATTGATATCTTATTAAGGAAAGGATGCCTACGCATAACATAATACCCGTCATATTACCCCTGAAAATGTTACATGTCACATGTGTCTATGAATGGGAAAAATCATTTCTCTTAGAAAAAAATATCCAACGTCTGGTGTTGTTTGAGAGGCTGTGGAAAAATACTATgcttgtactgtatgtactgtccAGTCTTCACATAATGATTGTTTAACCTTCTCTTCCTTTGCTTTGAAGATGACTCAATGTATAGTTAGTAGCCTTTGGAGACGACTCAATGTATATTTcgtaccagggttggggtcaattccatttcaattccagtcaattcagaaagtaaccCAAATTCCAATTATACATTTTTctaattgaaaagcattaaaGATCATTTCAGTTTCAGTCTACTTCCtcaattgactggaattgactccaaccctggtccATAGCCTTTGCTACTGCAGACAAGGATAACTAGTTGTTAACTGCATTTATAGAGCTAGAGACATCTACTGGGCTGGGAAGGCGTATTTAAGAGCGGTGTACTGAACAGTCGACAACACGCCTTTTAACTTACGCTTGAGTTGACATCTTCCGGGGACATtgcttttaaaatgctaattgtCAGCTGTCAAGTGTCTTTCTCTATAACGCGCCTTGGACTGAAACTCGGCCTTGAAGTACAGATGGTGTGCATTCAGTGACGGCTTACCTTCTCCAGTttagagagagccagagagtacCAGTCCTTAGCTCTGACCTGCATAAACCTCATGTTGGCGGGGTGGGTTAGCTCGGTGATGATACTGAGACTGGAGAACAACCTGGATGAGAAGAAAC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435544 lncRNA downstream 3070 32826132 ~ 32826947 (-) True G2130089
TU2435541 lncRNA downstream 4451 32824393 ~ 32825566 (-) False G2130088
TU2435543 lncRNA downstream 4451 32824393 ~ 32825566 (-) True G2130088
TU2435539 lncRNA downstream 7197 32822026 ~ 32822820 (-) True G2130086
TU2435392 lncRNA downstream 97727 32727777 ~ 32732290 (-) True G2129953
TU2435400 lncRNA upstream 35809 32870950 ~ 32872918 (-) True G2129961
TU2435622 lncRNA upstream 178238 33013379 ~ 33019915 (-) True G2130162
TU2435704 lncRNA upstream 270731 33105872 ~ 33107219 (-) True G2130229
TU2435711 lncRNA upstream 286025 33121166 ~ 33121566 (-) True G2130236
TU2435716 lncRNA upstream 296455 33131596 ~ 33131887 (-) True G2130241
XM_036966231.1 mRNA downstream 17993 32805525 ~ 32812024 (-) True LOC110509015
XM_036966230.1 mRNA downstream 18007 32805525 ~ 32812010 (-) False LOC110509015
XM_036966232.1 mRNA downstream 18007 32805525 ~ 32812010 (-) False LOC110509015
XM_036966228.1 mRNA downstream 26340 32798109 ~ 32803677 (-) True LOC110509016
XM_036966227.1 mRNA downstream 34291 32790153 ~ 32795726 (-) True LOC118944826
XM_021589960.2 mRNA upstream 40298 32875439 ~ 32919614 (-) True LOC110509019
XM_036966377.1 mRNA upstream 84779 32919920 ~ 32932160 (-) False ro60
XM_036966376.1 mRNA upstream 84779 32919920 ~ 32937170 (-) True ro60
XM_021589963.2 mRNA upstream 109401 32944542 ~ 32948512 (-) True LOC110509023
NM_001165154.2 mRNA upstream 119809 32954950 ~ 32957306 (-) True rgs1
TU2434271 other downstream 599803 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 664995 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 664995 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 664995 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 801459 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 563406 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1205065 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 1206297 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 1206428 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 1209549 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile