RNA id: TU2435704


Basic Information

Item Value
RNA id TU2435704
length 1310
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G2130229
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33105872 ~ 33107219 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acattgatctggtactcccagtttatacctctgcacattgatctggtactcccagtttatacctctgcacattgatctggtactcccagtttatacctctgcacattgatctggtactcccagtttatacctctgcacattgatctggtactcccagtttatacctctgcacattgatctggtactcccagtttatacctctgcacattgatctggtactcccagtttatacctctgcacattgatctggtactcccagtttatacctctgcacattgatctggtactcccagtttatacctctgcacattgatctggtgctcCCTGTctatacctctgcacattgatctggtactccctgtatatacctctgcacattgatctggtacttcctgtttatacctctgcacattgatctggtactccctgtctatacctctgcacattgatctggtactccctgtatatacctctgcacattgatctggtacttcctgtttatacctctgcacattgatctggtactccctgtatatacctctgcacattgatctggtactcccagtttatacctctgcacattgatctggtactccctgtctatacctctgcacattgatctggtactggtactccctgtatatacctctgcacattgatctggtactccctgtctatacctctgcacattgatctggtactggtactccctgtctatagatgcacattgatctggtactccctgtatatacctctgcacattgatctggtactggtactccctgtatatacctctgcacattgatctggtactccctgtctatacctctgcacattgatctggtactggtattccctgtctatagatgcacattgatctggtactccctgtctatagctgcacattgatctggtactggtactccctgtctatagctccacattgatctggtactggtactccctgtctatagctccacattgatctggtactggtactccctgtctatagctccacattgatctggtactggtacttcctgtctatagctccacattaatctggtactggtactccctgtctatagctccacattgatctggtactggtacttcctgtctatagctccacattaatctggtactggtactccctgtcgATAGCTACatttttgtgtattttattttattcctcttgtgttagtTCCTGTTTTATTTATTGTTGTTCTTTTTTgaaactctgcatcgttgggaaaggTTCATAAGCAAGCATTACACTGTAATGTcgacaccagttgtattcagtgcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435622 lncRNA downstream 85957 33013379 ~ 33019915 (-) True G2130162
TU2435400 lncRNA downstream 232954 32870950 ~ 32872918 (-) True G2129961
TU2435403 lncRNA downstream 270731 32830017 ~ 32835141 (-) True G2129964
TU2435544 lncRNA downstream 278925 32826132 ~ 32826947 (-) True G2130089
TU2435541 lncRNA downstream 280306 32824393 ~ 32825566 (-) False G2130088
TU2435711 lncRNA upstream 13947 33121166 ~ 33121566 (-) True G2130236
TU2435716 lncRNA upstream 24377 33131596 ~ 33131887 (-) True G2130241
TU2435740 lncRNA upstream 60707 33167926 ~ 33168125 (-) True G2130258
TU2435742 lncRNA upstream 64111 33171330 ~ 33171579 (-) True G2130260
TU2435750 lncRNA upstream 71661 33178880 ~ 33179177 (-) True G2130267
NM_001124640.1 mRNA downstream 132004 32968949 ~ 32973868 (-) True rgs18
XM_021588655.2 mRNA downstream 141720 32962496 ~ 32964152 (-) True LOC110508225
NM_001165154.2 mRNA downstream 148566 32954950 ~ 32957306 (-) True rgs1
XM_021589963.2 mRNA downstream 157360 32944542 ~ 32948512 (-) True LOC110509023
XM_036966376.1 mRNA downstream 168702 32919920 ~ 32937170 (-) True ro60
XM_036966337.1 mRNA upstream 42786 33150005 ~ 33153414 (-) True LOC118944830
XM_036966876.1 mRNA upstream 171335 33278554 ~ 33307172 (-) False LOC110508227
XM_036966878.1 mRNA upstream 171335 33278554 ~ 33307172 (-) False LOC110508227
XM_036966880.1 mRNA upstream 171335 33278554 ~ 33307172 (-) False LOC110508227
XM_036966881.1 mRNA upstream 171335 33278554 ~ 33307172 (-) False LOC110508227
TU2434271 other downstream 875658 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 940850 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 940850 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 940850 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 1077314 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 291328 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 932987 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 934219 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 934350 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 937471 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile