RNA id: TU2435760


Basic Information

Item Value
RNA id TU2435760
length 2247
lncRNA type antisense_over
GC content 0.52
exon number 4
gene id G2130277
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33206766 ~ 33209118 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTGAGCTGAGTTTGTAGGGAGGAGAACTGTCAACAACACTATAGCACTACTGTATATGCTATGACTGAGTGAAGCAGAGCTGTGGAGGGCTACACAGCCATCTCATCATCCAGACAGTCTGAAGGGCTCTCTGCGTTCAGCACGTTGAAGAGGCGTGCCGTGCCCTCAGGCCCCGCCCCCTCTCcctgcccccagctgtccctgTCACTGCTCTCGTCCGTGTTGGACTCGTATTCCGAACCGATCCCCGACTCCCGGAACCGGAGGAGCTCCAGGGCTCCAAGGACCTCCTCTCCACCCACAGGGGAGTCCCCGTCTGGGCCGCCTGAGCTCGGACTCTCCCCCtcctggtcttggttctggtggGGCTCCTCCCCCCTGCGGCGGGGGAAGCGGAAGCACTCCAGCCTCACGGCACTGCCGCCAGGCCCCAGAGAGAGGCTCTCCGGGGCCCTGGTCCCTGGTGGAGAGGACCCTGTTAGGGTGGAGGCCCATGGGCCATTGTTGATCTGGGGCTGACCCTGCTGGGGGCCCATGGAGGTGGGGATGGTGGGGGCGTCACGCAGGGGGGGCTTGGCACGGAAGGTGATCTCCAGCAAACTGTCCTGGGAGCCCACTGTGGAgaaaacagagaagagagagagtgagattgaAAGAGGGATAAATAAGGAaagatacaaataaaataaagacTGAGAATTAGTGGGAATGGAGGAAAGAAGATGagtggagggaatagagagatgagagaggaggtgaTTTGAGGGGATAATTGAGAGCGGAGATTATGATAAACTGGAAAGGGCAAGATGACAGGCAAGATAACAGGCAAGATGACAGGCaggatgagagacaggtaacaggCAAGATGACAGGCaggatgagagacaggtaacaggCAAGATGACAAGAAAGATAACAGGCAGATAACAGGCAAGATGACAGACAGGATGACAGGCAAGATGACAGGCAAGATGACAGGCAAGATGACAGACAAGATGACAGGCAAGATGACAGACAAGATGACAGGCAAGATGACAGGCAAGATGACAGGCAAGATGACAGGTAGGATGACAGGCAAGATGACAGGCAAGATGACAAGCAAGATGACAGGCAGATAACAGGCAAGATGACAGGCAAGATGACAGGCAAGAGGACAGGCAAGAGGACAGGCAGATAACAGGCAAGATGACAGGCAAGATGACAGGCAAGATGACAGGCAAGATGACAGCGTTACTGATAAGCTGTTATGTCAATTCTGATGATTATTAAATACATGACAGTACAGAAAAAGGAGAACAAAAGGATGaaagatgagaggggagagatgggaaaataaacagggatgagaggggagagatgagaagagaaacagggatgagaggggagagatgagtagagaaacagggatgagaggggagagatgagaagagaaaaagggatgagaggggagagatgagtagagaaacagggatgagaggggagagatgagtagagaaacagggatgagaggggagagatgagaagagaaacagggatgagaggggagagatgagtagagaaacagggatgagaggggagagatgagtagagaaacagggatgagaggggagagatgagaagagaaacagggatgagaggggagagatgagtagagaaacagggatgagaggggagagatgagaagagaaaaagggatgagaggggagagatgagtagagaaacagggatgagaggggagagatgagtagagaaacagggatgagaggggagagatgagaagagaaacagggatgagaggggagagatgagtagagaaacagggatgagaggggagagatgagtagagaaacagggatgagaggggagagatgagaagagaaacagggatgagaggggagagatgggaaaaTAAACAGGGATGAGGGGGGAGACATGAGACAAGAaacagggatgagaggggagagatgagaagataaacagggatgagaggggagagatgagaagagaaacagggatgagaggggagagatgagaagagaaacGGATGAGAGGGGAGCGATGAGAAGAGAaacagggatgagaggggagagatgagaagagaaaaagggatgagaggggagagatgggaaaaTAAACAGGGATGAGGGGGGAGACATGAGACAAGAaacagggatgagaggggagagatgagaagataaacagggatgagaggggagagatgagaagagaaacagggatgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435759 lncRNA downstream 257 33205942 ~ 33206509 (-) True G2130276
TU2435758 lncRNA downstream 1460 33204188 ~ 33205306 (-) True G2130275
TU2435755 lncRNA downstream 10688 33195873 ~ 33196078 (-) True G2130272
TU2435751 lncRNA downstream 26683 33179884 ~ 33180083 (-) True G2130268
TU2435750 lncRNA downstream 27589 33178880 ~ 33179177 (-) True G2130267
TU2435761 lncRNA upstream 4250 33213368 ~ 33213796 (-) True G2130278
TU2435769 lncRNA upstream 18040 33227158 ~ 33255976 (-) True G2130286
TU2435771 lncRNA upstream 20843 33229961 ~ 33230382 (-) True G2130288
TU2435778 lncRNA upstream 29904 33239022 ~ 33239346 (-) True G2130295
TU2435746 lncRNA upstream 52527 33261645 ~ 33267195 (-) True G2130264
XM_036966337.1 mRNA downstream 53352 33150005 ~ 33153414 (-) True LOC118944830
NM_001124640.1 mRNA downstream 232898 32968949 ~ 32973868 (-) True rgs18
XM_021588655.2 mRNA downstream 242614 32962496 ~ 32964152 (-) True LOC110508225
NM_001165154.2 mRNA downstream 249460 32954950 ~ 32957306 (-) True rgs1
XM_021589963.2 mRNA downstream 258254 32944542 ~ 32948512 (-) True LOC110509023
XM_036966876.1 mRNA upstream 69436 33278554 ~ 33307172 (-) False LOC110508227
XM_036966878.1 mRNA upstream 69436 33278554 ~ 33307172 (-) False LOC110508227
XM_036966880.1 mRNA upstream 69436 33278554 ~ 33307172 (-) False LOC110508227
XM_036966881.1 mRNA upstream 69436 33278554 ~ 33307172 (-) False LOC110508227
XM_036966879.1 mRNA upstream 69436 33278554 ~ 33307293 (-) True LOC110508227
TU2434271 other downstream 976552 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1041744 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 1041744 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 1041744 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 1178208 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 189429 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 831088 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 832320 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 832451 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 835572 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile