RNA id: TU2435761



Basic Information


Item Value
RNA id TU2435761
length 429
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G2130278
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33213368 ~ 33213796 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaacacagagataaatacactggcacagagagacaggaaacacagggataaatacactgacacagagagacaggaaacacagggataaatacactggcacagagagacaggaaacacagggataaatacactgacacagagagacaggaaacacagggataaatacactgacacagagagacaggaaacacagagataaatacactggcacagagagacaggtagcacagggataaatacactggggaaaataagcgacacctggaaggggtggagacaatgatgaggacaggtgaaacagatcagggcgtgacactgatgATGAGTCCAAATTCAGCAAATGTGTTTTAGCATGTCCAACATGTATGTGCTGTACCGCGTTAGCTACCCAGAGTTAGGAAACAGCAATGTCAGTATTCTTGTCACATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2435760 lncRNA downstream 4250 33206766 ~ 33209118 (-) True G2130277
TU2435759 lncRNA downstream 6859 33205942 ~ 33206509 (-) True G2130276
TU2435758 lncRNA downstream 8062 33204188 ~ 33205306 (-) True G2130275
TU2435755 lncRNA downstream 17290 33195873 ~ 33196078 (-) True G2130272
TU2435751 lncRNA downstream 33285 33179884 ~ 33180083 (-) True G2130268
TU2435769 lncRNA upstream 13362 33227158 ~ 33255976 (-) True G2130286
TU2435771 lncRNA upstream 16165 33229961 ~ 33230382 (-) True G2130288
TU2435778 lncRNA upstream 25226 33239022 ~ 33239346 (-) True G2130295
TU2435746 lncRNA upstream 47849 33261645 ~ 33267195 (-) True G2130264
TU2435745 lncRNA upstream 59098 33272894 ~ 33274755 (-) True G2130263
XM_036966337.1 mRNA downstream 59954 33150005 ~ 33153414 (-) True LOC118944830
NM_001124640.1 mRNA downstream 239500 32968949 ~ 32973868 (-) True rgs18
XM_021588655.2 mRNA downstream 249216 32962496 ~ 32964152 (-) True LOC110508225
NM_001165154.2 mRNA downstream 256062 32954950 ~ 32957306 (-) True rgs1
XM_021589963.2 mRNA downstream 264856 32944542 ~ 32948512 (-) True LOC110509023
XM_036966876.1 mRNA upstream 64758 33278554 ~ 33307172 (-) False LOC110508227
XM_036966878.1 mRNA upstream 64758 33278554 ~ 33307172 (-) False LOC110508227
XM_036966880.1 mRNA upstream 64758 33278554 ~ 33307172 (-) False LOC110508227
XM_036966881.1 mRNA upstream 64758 33278554 ~ 33307172 (-) False LOC110508227
XM_036966879.1 mRNA upstream 64758 33278554 ~ 33307293 (-) True LOC110508227
TU2434271 other downstream 983154 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1048346 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 1048346 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 1048346 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 1184810 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 184751 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 826410 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 827642 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 827773 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 830894 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile