RNA id: TCONS_00058195


Basic Information

Item Value
RNA id TCONS_00058195
length 4395
lncRNA type read_through
GC content 0.46
exon number 2
gene id XLOC_028733
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 19534461 ~ 19539090 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtcctttttttttttcttttcttccaaAAATCCTTTTATTGCATTTGTAACATTTGGCACAGTACAAATTCATGGTGCTTTTACAAGATAAACCTGCAAAGATCAACATTGACCTTTatcttttatgttttaaaagaaagACTTTTCagtataaatgttgttttttctgttgttgCTGTTGAAATTTTCACTGCATTCTCTGTAGCGTTGTTTAGAAATCACACAGAATGCCCTTTTTAAACAAGACTATCCTCGTTTCTTAAATCCAGCACAGCATCTTAAAACAACTCATCTTTTAAATAGGAGTTATAAGTTAGAAaatagtttcaatttatttttttatataatctgCTTCTCTATTACCAGCCCATGGTAGTTTGTTTttccatatatatttatttataagcatgTACAACAAGAATCAGTCTTTAGGAATTGCACTCTGtacaaaaaaaagtagctcctgtcttttttttctcttgtgcATTCTATTGCATGTTTTTATGCTGGGGTGATGGTGGGCTTATAAGGGGGGCGAGAGGGTCATTTTCACTGAGGTTCTGATTTGTTGAGGACCAGGCTATATCTGAGTCTCTTGTACTTTCTCCTTGGTGTGAGTTTTTATAACAAGGGCTTCAGGAGAAGCTGTGATAGCGCTGGGCATGGTTCGAGGCAGAGAATTTCCAATGCTGTTGCTTTCTGTCCATTTGGCACTGTGGCCTGGTGGCTTGTAGGTGTTATATTTGGGCTTCATAGTGCTGTAGTCCATCTTATGTGGGCTGTAGTCCACATTATGAGGACTGTAATCCTTTTTATACTTGTGAGGGCTGAAGTCACGACTGACATATTCCGCTTTGAGAGGGCTGTACTCTGCCTTGAAAGCAATGTAGTCAGGTTTGAAAAAGCTGTCTGTCTTGAAGGGGCTGTAATCAGGTTTGGGCTTGGGCATACTGTAGTCAGTTTTTGATTTCGGAACACCGTACTCTGTTTTGAACGGACTGAAGTCTGGTTTAGGCGTATGAGATTTGTAGTCCGGTTTGTGGGTGCCATATCCATGTTTGTATGGGCTTTGTTCCGGTTTTTTGTGTACGTGGTAATCCGGCAAGGACTTGTGTGAATAATCCGTGAGTTTCTGAGAGCTGTATTCCAGAGTTGGTTGGTACATATAGTCTGCTTTAGGTTTGTAAGTATTGTAGTCCGATTTGGGTTGATGGATGCTGAAATCTTGCTTGGGCTTATGGGTACTGTATTCTAGTTTTGGTTTGTAGCCGTAGTCAAACTTGTGGGTGTAGTCCGCTTTGTAAATACTGTTATGATTCCTTATTTCTGGTAGAGAAAGTTGCCCCTCATCTGCAATATTGGCAGCAGAAGCCGATGGGGGCAGTTCTTCATCTACCGGAATAATCTCCACAGTTCTGGCTGAAGCAACTGTGCTCCTCTGTTGATGCCTCTTTCgtagtttataaaatacaattagcaTGATTGCTGCTAGCAAGGTTACTGCCACAAAACAACCGATAATGATCTTTGTTGTCTTCATCACCTCATCCAGACTGGTACTGGCTGGATTGGGCGGCTTTCCTGTTGTTACTTTCGAGCCAGGTATAACAGATGGACGACTTGGTGGAGTGTCTGTGCTCTGAAGCAGGACTGTTGGGGTTGAGATAAAAACTGGCTGAAAGACTGAAGGCGATGCTGTGGTGGTGGTGCTGGCACCTGCTGTGGTTGTGGTGGTTTTGGGCTTGGGCATTTCAGATGTGGGGCTCAGCACCTCCACTGTGACTGTGGTGAAGTAACTGAGGTTTGACGTGTTAAGCTCAGCCGCACTTACATTTAGATAGGCTGAAGCATTGGAATTCCCAGCCGCATTGGACACCATGCAGGTGTACATGCCTGTGTCACCTGCAAGTACATTTGAAAAATTCAAAGTCCCATCATTTAGCACTGTTAACCGTGGGTGACTTGATGCATGAGTTAGAATTGTCCCGTTTGGTAGGAGCCATCGTACAGCAGACATGGCGGCTGTTCGACACTTCAGTTCTGCCACACGTTCAGCTGAAATATTCAGGTCTCTTGGGGCATCTGCGATGAAGGGGGCGGAGCACTGCATTGCACCGGTGTCACCCCGATCCAGCTCGACCAACTGGCGGCCTCTCATGTGTGCAGGGGAATGGCAACGCCCACAGCATGTTGAGTTGGTGGGTATGTACTCTCGCAGCCAACGTGCTAACCAAAGTGAATCACAGCCACAGTTCCAGGGGTTGTGGTGGAGGTGAAGTTCCACCAGGTATTTCAGTGGTGTATAGAGGTCATGGGGCAGTGAGCTTAAATTGTTGTGGGCCAAATTCAGCTCCACCAAAGAGGCCAGGTCATCAAAGGCATTTCGCTCAATTAGCCCTATTTGAGAGTTCATGATCCATAACTTTTTGAGTGAAGACAGTCCTCTGAATGAACCTGGTTTGATTTCGGGAAAGAGGTTCTCAGAGATTTCCAGCTCCTCCAGCCCAACGAGAGGTGTGAAGTTGGGCATCTCCCCTCGAATGTTGCACATCCCCAGGTTGAGATACTTGAGGTTAACTAGACCTTCAAAGGCCCCATCAGAGATGTATTCCAGTTTTCTCAGTTCACCCAGATCCAGTCTCATCAGCGATGGCACTCTGTTAAATGCATACGATGGGATGCTTTCAATGGGGTTATTTCTCAGCCACAGCTCTCTCAGCTTGGACAGATACTCAAACGCCCCACTTGGCACCACAGTCAATCTGTTATCAAATAGTTCCAGAGTATTGAGATTGGTTAACCCACTGAAGGCACCTACTTCAATCTGTCTGATAGCATTGCGGCCCAGCTGTAACACTTCTAGGTGATGGAGGTTGCGGAATGAGTCGACCTGCACAGACTCGATGGCGTTTTCCATCAGGTTTAGGTGCCGGGTGGTGCTGGGTATGCCTGGGGGCACACGAGTGAGCCCACGTCTGGTGCACACCACCTTGCTGAGCTGGTTGTTGCAGGAGCAATCAGTCGGGCAACCCTGGGGCCCGGCCGCGGCCACCACCTCCACGCACGCTTGAACCTGGAGACTAAACGTTGTGTCACAAGTATTTGAGTAACGAAGGAGAAGTGAAAGGCCAAGGAATAATGAATAAAGTAAAAGGGGGGATATATTTTATGGATAAAAATGTTTGGAAAGGCTCAACACCTACCTCAAAGGTTTTACACGTCCAATTTTTGCAatcacaaaacagattttttcccTCAAATTCCTATATTCCCATGATTAGCAAAGCCGTCTCTTTCATTTGTCAGAAAACAAGAGATGAATGCCAAAATGGCCCCTAATAAATCCACAAAGGAGCATCCGAGGAGATGTGTAGTGGCTCTGCAGGGCCTCAGAGCTTTAGGCTACAGTACCAATCCAGTTTGGCTCCTATAAAAGTGCTCGCGCTCGCACTATCCACAGATGCTTGTCCTTGGATACCTCCGCTTGACGTTGCTACTAAATGCCCATGTCTCCATAGAGGACCGCTCACACATGCTAAACCAGAGTAGGGGGAGGAAAAAGGGAGGGGTAGTTAGAGGGGGGGAAAGAGAGGAATAAGAATGAAAAATCCAGTCTTTTCAAATGTTCTATGCTTTTGTTTTAAGAATAATAAAAGTGCGTCTTCAATCTTTCCACTCACTTTACTTTGTCCGTCCCCCTCTCAGTACATTTTGTCCGCTCGATTTGTCAGCACCTTGTCCAGCTGAAAAGACTGACACTGCGGTCATTAGCGCATTTCTTTCCTTAAGTAGCTCCGCTTTCCATCTCTGTACCCGCACGCTCGCATGCAGAGAAGGCTGTAGGGTTCTTTATATACGCTTCCCAgtaatccttaattttttttctgtaagaaGTTGATCGTAAGAGCCAGTGAAGGTGTACCAGCGCAGAGACAGCTCCATAGGAAGGCTCATTCACTGGAGAGAGATCGCTCTCTATCTGCCTCGTTCTCCTTCGCTCTCTCTTGCTTTCGAGCGCTCTCTCACTCCCTAGAATGAGAGAAAAAAGAGAAGGGAGAGCGTTTCTCCCCCCGCCCCCCTCCGTGTGACGTTGTGTCGATCAGAGAAGTATCCGTATAGCGCTGCAGTGCCCTGAGCTCAGTGCAAAGTAGGAGCTCTCAGCTTTGTCAGCGGCACAGCTGTCCGGCTCAAGCTGGTGGACGAGCGCTGAGGCAAGGGAAAAGTGGCTCCCCATGGCAACATCTTTTCTTGTGCCCTCCTTtctatgctttttatttttaaccttttttgcCCCGGGTTAGTCCTTCTTCCTACCGCTATGCACCGGTGTTTTCGTTGCGTTTTGTGGTGCAGTAGCAGGCACCCGGGACGCAGACTTGCATGCCTGCTCTTCTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058194 lncRNA downstream 164676 19366363 ~ 19369785 (-) True XLOC_028731
TCONS_00057351 lncRNA downstream 164721 19284658 ~ 19369740 (-) False XLOC_028731
TCONS_00058193 lncRNA downstream 164721 19366363 ~ 19369740 (-) False XLOC_028731
TCONS_00057350 lncRNA downstream 249019 19268385 ~ 19285442 (-) False XLOC_028731
TCONS_00058192 lncRNA downstream 569297 18952482 ~ 18965164 (-) True XLOC_028727
TCONS_00058196 lncRNA upstream 360925 19900015 ~ 19901133 (-) True XLOC_028736
TCONS_00058197 lncRNA upstream 499310 20038400 ~ 20039284 (-) True XLOC_028739
TCONS_00058198 lncRNA upstream 505777 20044867 ~ 20047402 (-) False XLOC_028741
TCONS_00058200 lncRNA upstream 505777 20044867 ~ 20047884 (-) False XLOC_028741
TCONS_00058199 lncRNA upstream 505777 20044867 ~ 20047884 (-) True XLOC_028741
TCONS_00055698 mRNA downstream 500656 19031768 ~ 19033805 (-) True XLOC_028729
TCONS_00055696 mRNA downstream 505600 18985529 ~ 19028861 (-) False XLOC_028728
TCONS_00055697 mRNA downstream 518065 18987373 ~ 19016396 (-) True XLOC_028728
TCONS_00055695 mRNA downstream 580460 18952482 ~ 18954001 (-) False XLOC_028727
TCONS_00055694 mRNA downstream 595123 18853475 ~ 18939338 (-) True XLOC_028726
TCONS_00055701 mRNA upstream 63876 19602966 ~ 19693978 (-) True XLOC_028732
TCONS_00055702 mRNA upstream 171567 19710657 ~ 19742300 (-) False XLOC_028734
TCONS_00055703 mRNA upstream 172868 19711958 ~ 19742303 (-) True XLOC_028734
TCONS_00055704 mRNA upstream 229589 19768679 ~ 19883985 (-) False XLOC_028735
TCONS_00055706 mRNA upstream 229589 19768679 ~ 19884440 (-) False XLOC_028735
TCONS_00055699 other downstream 486906 19047466 ~ 19047555 (-) True XLOC_028730
TCONS_00055684 other downstream 880200 18654155 ~ 18654261 (-) True XLOC_028720
TCONS_00055683 other downstream 881220 18653148 ~ 18653241 (-) True XLOC_028719
TCONS_00055676 other downstream 927923 18597660 ~ 18606538 (-) False XLOC_028717
TCONS_00055674 other downstream 939321 18593830 ~ 18595140 (-) True XLOC_028716
TCONS_00055714 other upstream 510234 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055724 other upstream 637053 20176143 ~ 20177868 (-) False XLOC_028749
TCONS_00055737 other upstream 856959 20396049 ~ 20396170 (-) True XLOC_028756
TCONS_00055751 other upstream 2112581 21651671 ~ 21652632 (-) True XLOC_028763
TCONS_00055755 other upstream 2697268 22236358 ~ 22237294 (-) True XLOC_028767

Expression Profile

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