RNA id: TU2435904



Basic Information


Item Value
RNA id TU2435904
length 299
lncRNA type intronic
GC content 0.45
exon number 1
gene id G2130409
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33432755 ~ 33433053 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cacagattttctatagggttgaggtcatggctttgtgatggccactccaatacattgactttgttgtacttaagccattttgccacaactttggaagtatgcttggggtcattgtccagttggaagacccatttgcgaccaagctttaacttcctgactgatgtcttgcgatgttgcttcaatatatccacataatttcccttctcatgatgccatctattttgtgaagtgcaccagtccctcctgcagcaaagcaccccacaacatgatgctgccacccctgtgctttacggttggga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2435899 lncRNA downstream 5900 33426418 ~ 33426855 (-) True G2130404
TU2435893 lncRNA downstream 19392 33412968 ~ 33413363 (-) True G2130398
TU2435889 lncRNA downstream 32745 33399735 ~ 33400010 (-) True G2130394
TU2435882 lncRNA downstream 42500 33390032 ~ 33390255 (-) True G2130387
TU2435880 lncRNA downstream 44396 33388032 ~ 33388359 (-) True G2130385
TU2435833 lncRNA upstream 7349 33440402 ~ 33450543 (-) True LOC110509034
TU2435965 lncRNA upstream 119830 33552883 ~ 33554094 (-) True G2130462
TU2435980 lncRNA upstream 144739 33577792 ~ 33578201 (-) True G2130476
TU2435990 lncRNA upstream 160661 33593714 ~ 33594568 (-) True G2130484
TU2436016 lncRNA upstream 198780 33631833 ~ 33632058 (-) True G2130506
XM_036966734.1 mRNA downstream 9897 33406677 ~ 33422858 (-) False LOC110509034
XM_036966871.1 mRNA downstream 51555 33313433 ~ 33381200 (-) True LOC110509030
XM_036966872.1 mRNA downstream 52089 33313433 ~ 33380666 (-) False LOC110509030
XM_036966874.1 mRNA downstream 52090 33313433 ~ 33380665 (-) False LOC110509030
XM_021589978.2 mRNA upstream 85651 33518704 ~ 33526697 (-) True LOC110509036
XM_021589979.2 mRNA upstream 121964 33555017 ~ 33562140 (-) True LOC110509037
LOC110508228 mRNA upstream 130882 33563935 ~ 33568603 (-) True LOC110508228
XM_021589980.2 mRNA upstream 139057 33572110 ~ 33575990 (-) False LOC110509038
XM_021589981.2 mRNA upstream 139057 33572110 ~ 33575991 (-) True LOC110509038
TU2435888 other downstream 33671 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1202541 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1267733 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 607153 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 608385 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 608516 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 611637 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 1052816 34485869 ~ 34486176 (-) True G2131621

Expression Profile