RNA id: TU2435965


Basic Information

Item Value
RNA id TU2435965
length 1212
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G2130462
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33552883 ~ 33554094 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactgtaaagtctacactgttggttaagggcttgtaagaaagcatttcactgtaaagtctacactgttggttaagggcttgtaagaaagcatttcactgtaaagtctacactgttggttaagggcttgtaagaaagcatttcactgtaaagtctacacttgttgtattcggtgcatgtggcaAATTAagtgtgatttgatttgagagtgtAGGCTGTAGAAGGACTGGGAGAAGGACAGGAGTGGGGCTTAGCCAGTAAGGGTTAGTAAGTAAGGGTGAACCAGTTCATTTGTAATCTGCTTGTGAGGGATGGTAGGCCAAACTGGTCATAGAGAGAACAGTGTTGGGTGTGGTAGGGGGATCCAGTGGGAGAGAACAGGGTTGGGTGTGGTAGGGGGCTCTAGTGTGAGAGAACAGGGTTGGGTGTGGTAAGGGGCTCCAGTGGGAGAGAACAGGGTTGGGTGTGGTAAGGGGAGAGAACAGGGTTGGGTGTGGTAGGGGGCTCCAGTGTGAGAGAACAGGGTTGGGTGTGGTAGGGGGCTCCAGTGTGAGAGAACAGGGTTGGGTGTGGTAAGGGGCTCCAGTGTGAGACAACAGGGTTGGGTGTGGTAGGGGGCTCCAGTGTGAGAGAACAGGGTTGGGTGTGGTAAGGGGCTCCAGTGGGAGAGAACAGGGTTGGGTGTGGTAGGGGGCTCCAGTGTGAGAGAACAGGGTTGGGTGTGGTAGGGGGCTCCAGTGTGAGAGAACAGGGTTGGGTGTGGTAAGGGGCTACAGTGGCTAACCTAATGGCTGAGTGGTACAATGTCCAGTTTTCAATCTAGCCTATATTTGTTTTCctattgtaaaaaatatattgctTGTTATCGTTTGACAAGTGAGCTTTTGTCTGTGCTTTCTGTCTGCCTTTGTCGACTGTGTtttcatccatccacccatctatctatttggataaaagtgtctgctaaatggcataaaTATTATGATATGAATTCTAATATTTAGGGTTGCACGATATATCAGTGAACATATCGAaatcggccgatattagctaaaaatgccaacatcatgtctagtttaacgccgatgtcaaagctgacgtgcagaCCTATATAACAcaggtacatgacgtaatgacaTCACGTAACATTTTacactacacgtgcaacacagcattcctaacctggCCCACAATGTCTTCTGTGTGGATCGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435833 lncRNA downstream 102340 33440402 ~ 33450543 (-) True LOC110509034
TU2435904 lncRNA downstream 119830 33432755 ~ 33433053 (-) True G2130409
TU2435899 lncRNA downstream 126028 33426418 ~ 33426855 (-) True G2130404
TU2435893 lncRNA downstream 139520 33412968 ~ 33413363 (-) True G2130398
TU2435889 lncRNA downstream 152873 33399735 ~ 33400010 (-) True G2130394
TU2435980 lncRNA upstream 23698 33577792 ~ 33578201 (-) True G2130476
TU2435990 lncRNA upstream 39620 33593714 ~ 33594568 (-) True G2130484
TU2436016 lncRNA upstream 77739 33631833 ~ 33632058 (-) True G2130506
TU2436018 lncRNA upstream 81469 33635563 ~ 33635926 (-) True G2130508
TU2436024 lncRNA upstream 95382 33649476 ~ 33649702 (-) True G2130514
XM_021589978.2 mRNA downstream 26186 33518704 ~ 33526697 (-) True LOC110509036
XM_036966732.1 mRNA downstream 38422 33406673 ~ 33514461 (-) False LOC110509034
XM_036966733.1 mRNA downstream 67714 33406673 ~ 33485169 (-) False LOC110509034
XM_036966734.1 mRNA downstream 130025 33406677 ~ 33422858 (-) False LOC110509034
XM_036966871.1 mRNA downstream 171683 33313433 ~ 33381200 (-) True LOC110509030
XM_021589979.2 mRNA upstream 923 33555017 ~ 33562140 (-) True LOC110509037
LOC110508228 mRNA upstream 9841 33563935 ~ 33568603 (-) True LOC110508228
XM_021589980.2 mRNA upstream 18016 33572110 ~ 33575990 (-) False LOC110509038
XM_021589981.2 mRNA upstream 18016 33572110 ~ 33575991 (-) True LOC110509038
trnav-cac-89 mRNA upstream 28466 33582560 ~ 33582632 (-) True trnav-cac-89
TU2435888 other downstream 153799 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1322669 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1387861 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 486112 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 487344 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 487475 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 490596 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 931775 34485869 ~ 34486176 (-) True G2131621

Expression Profile