RNA id: TU2436018



Basic Information


Item Value
RNA id TU2436018
length 364
lncRNA type intronic
GC content 0.52
exon number 1
gene id G2130508
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33635563 ~ 33635926 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gttttagctttagccaacaccatcttcagattagccttaacgtcggtagccctgccccccggtaaacagtgtatgatcgctggatgattcgttttaagtctaatactgcgggtaatggagtcgccaatgactagagttttcaatttgtcagagctaatggtgggaagcttcggcgtctcagaccccgtaacgggaggagtagagaccagagaagactcggcctctgactccgacccgctgcttaatggggaaaaccggttgaaagtttctgtcggctgaatgagcgacaccggttgagcgttcctacagcatttccttccagaaaccgtgagaaagttgtccggctgcggggactgtgcgaggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2436016 lncRNA downstream 3505 33631833 ~ 33632058 (-) True G2130506
TU2435990 lncRNA downstream 40995 33593714 ~ 33594568 (-) True G2130484
TU2435980 lncRNA downstream 57362 33577792 ~ 33578201 (-) True G2130476
TU2435965 lncRNA downstream 81469 33552883 ~ 33554094 (-) True G2130462
TU2435833 lncRNA downstream 185020 33440402 ~ 33450543 (-) True LOC110509034
TU2436024 lncRNA upstream 13550 33649476 ~ 33649702 (-) True G2130514
TU2436034 lncRNA upstream 21450 33657376 ~ 33657608 (-) True G2130519
TU2436044 lncRNA upstream 37475 33673401 ~ 33674141 (-) True G2130528
TU2436050 lncRNA upstream 42968 33678894 ~ 33679171 (-) True G2130532
TU2436055 lncRNA upstream 53305 33689231 ~ 33689445 (-) True G2130537
trnav-cac-89 mRNA downstream 52931 33582560 ~ 33582632 (-) True trnav-cac-89
XM_021589981.2 mRNA downstream 59572 33572110 ~ 33575991 (-) True LOC110509038
XM_021589980.2 mRNA downstream 59573 33572110 ~ 33575990 (-) False LOC110509038
LOC110508228 mRNA downstream 66960 33563935 ~ 33568603 (-) True LOC110508228
XM_021589979.2 mRNA downstream 73423 33555017 ~ 33562140 (-) True LOC110509037
XM_036966338.1 mRNA upstream 278424 33914350 ~ 33916205 (-) True LOC118944832
XM_021589988.2 mRNA upstream 317771 33953697 ~ 33972737 (-) False LOC110509043
XM_021589989.2 mRNA upstream 317771 33953697 ~ 33972737 (-) True LOC110509043
XM_036966941.1 mRNA upstream 341650 33977576 ~ 33985115 (-) False LOC110509045
XM_021589991.2 mRNA upstream 341650 33977576 ~ 33990790 (-) True LOC110509045
TU2435888 other downstream 236479 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1405349 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1470541 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 404280 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 405512 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 405643 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 408764 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 849943 34485869 ~ 34486176 (-) True G2131621

Expression Profile