RNA id: TU2436044



Basic Information


Item Value
RNA id TU2436044
length 741
lncRNA type intronic
GC content 0.37
exon number 1
gene id G2130528
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33673401 ~ 33674141 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cacatgcagtaagtagtacagtatacacacacacacacatacagtaagtagtacagtatacacacacacatacagtaagtagtacagtatacacacacacacaaagtaagtagtacagtatacacacacacacatagtaaatcgtacagtatacacacacacatacagtaagtagtacagtatacacgtacagtatacacacacacacacaaagtacgtagtacagtatacatgtacagtatacacacacacacaaagtaagtagtacagtatacacacacacacacacacaaagtaagtagtacagtatacacacacacacacacacacacacacacacaaagtaagtagtacagtatacacacacacacacacaaagtaagtagcacagtatacacacacacacacaaagtaagtagcacagtatacacacacacacacaaagtaagtagtacagtatacacacacacatacagtaagtagtacagtatacacacacacatacagtaagtagtacagtatacacacacacacaaagtaagtagtacagtatacacacacacacatacagtaagtagtacagtatacacacacacatacagtaagtagtacagtatacacacacacacacacaaagtaagtagtacagtatacacacacacacacacacaaagtaagtagtacagtatacacgtacagtatacactcacacacacacaaagtagtacagtatacatgtac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2436034 lncRNA downstream 15793 33657376 ~ 33657608 (-) True G2130519
TU2436024 lncRNA downstream 23699 33649476 ~ 33649702 (-) True G2130514
TU2436018 lncRNA downstream 37475 33635563 ~ 33635926 (-) True G2130508
TU2436016 lncRNA downstream 41343 33631833 ~ 33632058 (-) True G2130506
TU2435990 lncRNA downstream 78833 33593714 ~ 33594568 (-) True G2130484
TU2436050 lncRNA upstream 4753 33678894 ~ 33679171 (-) True G2130532
TU2436055 lncRNA upstream 15090 33689231 ~ 33689445 (-) True G2130537
TU2436058 lncRNA upstream 22196 33696337 ~ 33696600 (-) True G2130540
TU2436059 lncRNA upstream 25129 33699270 ~ 33699504 (-) True G2130541
TU2436064 lncRNA upstream 28714 33702855 ~ 33703079 (-) True G2130546
trnav-cac-89 mRNA downstream 90769 33582560 ~ 33582632 (-) True trnav-cac-89
XM_021589981.2 mRNA downstream 97410 33572110 ~ 33575991 (-) True LOC110509038
XM_021589980.2 mRNA downstream 97411 33572110 ~ 33575990 (-) False LOC110509038
LOC110508228 mRNA downstream 104798 33563935 ~ 33568603 (-) True LOC110508228
XM_021589979.2 mRNA downstream 111261 33555017 ~ 33562140 (-) True LOC110509037
XM_036966338.1 mRNA upstream 240209 33914350 ~ 33916205 (-) True LOC118944832
XM_021589988.2 mRNA upstream 279556 33953697 ~ 33972737 (-) False LOC110509043
XM_021589989.2 mRNA upstream 279556 33953697 ~ 33972737 (-) True LOC110509043
XM_036966941.1 mRNA upstream 303435 33977576 ~ 33985115 (-) False LOC110509045
XM_021589991.2 mRNA upstream 303435 33977576 ~ 33990790 (-) True LOC110509045
TU2435888 other downstream 274317 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1443187 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1508379 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 366065 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 367297 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 367428 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 370549 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 811728 34485869 ~ 34486176 (-) True G2131621

Expression Profile