RNA id: TU2436087


Basic Information

Item Value
RNA id TU2436087
length 444
lncRNA type intronic
GC content 0.42
exon number 1
gene id G2130566
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33737160 ~ 33737603 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gattttcacttttcgcaccaaagtacgttaatctctaggagacagaacgcgactccttcctgagcggtatgacggctgcgtggtcccatggtgtttatacttgcgtactattgtttgtacagatgaacgtggcaccttcaggtgtttggaaattgctcccaaggatgaaccagacttgtggaggtctacaaatgtttttctgaggacttggctgatttcttttgattttcccatgatgtcaagccaagaggcactgagtttgaaggtaagccttgacatacatccacaggtacacctccaattgactcaaattatgtcaattagcctatcagaagattctaaagccatgacatcattttctggaattttccaagctgtttaaaggcacagtcaatttagtgtatgtaaacttctgacccactggaattgtgatacagtgaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2436083 lncRNA downstream 2274 33734624 ~ 33734886 (-) True G2130562
TU2436076 lncRNA downstream 14581 33721844 ~ 33722579 (-) True G2130555
TU2436070 lncRNA downstream 21377 33715584 ~ 33715783 (-) True G2130552
TU2436069 lncRNA downstream 21808 33714854 ~ 33715352 (-) True G2130551
TU2436064 lncRNA downstream 34081 33702855 ~ 33703079 (-) True G2130546
TU2436099 lncRNA upstream 19415 33757018 ~ 33757405 (-) True G2130577
TU2436102 lncRNA upstream 23576 33761179 ~ 33761402 (-) True G2130580
TU2436104 lncRNA upstream 25341 33762944 ~ 33763193 (-) True G2130582
TU2436110 lncRNA upstream 37273 33774876 ~ 33775083 (-) True G2130588
TU2436115 lncRNA upstream 50128 33787731 ~ 33787946 (-) True G2130593
trnav-cac-89 mRNA downstream 154528 33582560 ~ 33582632 (-) True trnav-cac-89
XM_021589981.2 mRNA downstream 161169 33572110 ~ 33575991 (-) True LOC110509038
XM_021589980.2 mRNA downstream 161170 33572110 ~ 33575990 (-) False LOC110509038
LOC110508228 mRNA downstream 168557 33563935 ~ 33568603 (-) True LOC110508228
XM_021589979.2 mRNA downstream 175020 33555017 ~ 33562140 (-) True LOC110509037
XM_036966338.1 mRNA upstream 176747 33914350 ~ 33916205 (-) True LOC118944832
XM_021589988.2 mRNA upstream 216094 33953697 ~ 33972737 (-) False LOC110509043
XM_021589989.2 mRNA upstream 216094 33953697 ~ 33972737 (-) True LOC110509043
XM_036966941.1 mRNA upstream 239973 33977576 ~ 33985115 (-) False LOC110509045
XM_021589991.2 mRNA upstream 239973 33977576 ~ 33990790 (-) True LOC110509045
TU2435888 other downstream 338076 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1506946 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1572138 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 302603 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 303835 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 303966 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 307087 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 748266 34485869 ~ 34486176 (-) True G2131621

Expression Profile