RNA id: TU2436356



Basic Information


Item Value
RNA id TU2436356
length 309
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G2130787
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33874192 ~ 33874500 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAACAAGCCTCACTCAAGGACGCTACACTTGGTGTCACAACCAAGTCCTTAAAAACCTTGCGTCCGCCCTGGAGGACAAGCGAGCTGCCACCAACTCCCTACCACCCCCAGCAGCATCACACCCCTTACGGACAAACTTTGTCCGCGAAGGGGCTAAACCACCGAAGCGCGGCTCGACACCATTAGAGCGAGACCAGCTGCGCTTGGCCCGCGACTGGAAAATGCTAGCTGACATTGGCCGGCAACTTGTGTTTCCTCCGGAGATCGCAACCACCACCCTAAGACCTGACATGGTGCTCTGGTCCCGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2436183 lncRNA downstream 23905 33849858 ~ 33850287 (-) True G2130642
TU2436118 lncRNA downstream 82516 33791405 ~ 33791676 (-) True G2130596
TU2436115 lncRNA downstream 86246 33787731 ~ 33787946 (-) True G2130593
TU2436110 lncRNA downstream 99109 33774876 ~ 33775083 (-) True G2130588
TU2436104 lncRNA downstream 110999 33762944 ~ 33763193 (-) True G2130582
TU2436358 lncRNA upstream 1259 33875759 ~ 33876007 (-) True G2130789
TU2436374 lncRNA upstream 31574 33906074 ~ 33906720 (-) True G2130805
TU2436375 lncRNA upstream 32740 33907240 ~ 33907582 (-) True G2130806
TU2436419 lncRNA upstream 132106 34006606 ~ 34006952 (-) True G2130847
TU2436424 lncRNA upstream 140324 34014824 ~ 34015681 (-) True G2130852
XM_036966528.1 mRNA downstream 76906 33626451 ~ 33797286 (-) True LOC110508229
trnav-cac-89 mRNA downstream 291560 33582560 ~ 33582632 (-) True trnav-cac-89
XM_021589981.2 mRNA downstream 298201 33572110 ~ 33575991 (-) True LOC110509038
XM_021589980.2 mRNA downstream 298202 33572110 ~ 33575990 (-) False LOC110509038
LOC110508228 mRNA downstream 305589 33563935 ~ 33568603 (-) True LOC110508228
XM_036966338.1 mRNA upstream 39850 33914350 ~ 33916205 (-) True LOC118944832
XM_021589988.2 mRNA upstream 79197 33953697 ~ 33972737 (-) False LOC110509043
XM_021589989.2 mRNA upstream 79197 33953697 ~ 33972737 (-) True LOC110509043
XM_036966941.1 mRNA upstream 103076 33977576 ~ 33985115 (-) False LOC110509045
XM_021589991.2 mRNA upstream 103076 33977576 ~ 33990790 (-) True LOC110509045
TU2435888 other downstream 475108 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1643978 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1709170 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 165706 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 166938 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 167069 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 170190 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 611369 34485869 ~ 34486176 (-) True G2131621

Expression Profile