RNA id: TU2436375



Basic Information


Item Value
RNA id TU2436375
length 343
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G2130806
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33907240 ~ 33907582 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagccccctaagttaatactttgtagcgccacattttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagaaactgaatttttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2436374 lncRNA downstream 520 33906074 ~ 33906720 (-) True G2130805
TU2436358 lncRNA downstream 31233 33875759 ~ 33876007 (-) True G2130789
TU2436356 lncRNA downstream 32740 33874192 ~ 33874500 (-) True G2130787
TU2436183 lncRNA downstream 56953 33849858 ~ 33850287 (-) True G2130642
TU2436118 lncRNA downstream 115564 33791405 ~ 33791676 (-) True G2130596
TU2436419 lncRNA upstream 99024 34006606 ~ 34006952 (-) True G2130847
TU2436424 lncRNA upstream 107242 34014824 ~ 34015681 (-) True G2130852
TU2436426 lncRNA upstream 108716 34016298 ~ 34016990 (-) True G2130854
TU2436427 lncRNA upstream 111613 34019195 ~ 34019432 (-) True G2130855
TU2436428 lncRNA upstream 112467 34020049 ~ 34020266 (-) True G2130856
XM_036966528.1 mRNA downstream 109954 33626451 ~ 33797286 (-) True LOC110508229
trnav-cac-89 mRNA downstream 324608 33582560 ~ 33582632 (-) True trnav-cac-89
XM_021589981.2 mRNA downstream 331249 33572110 ~ 33575991 (-) True LOC110509038
XM_021589980.2 mRNA downstream 331250 33572110 ~ 33575990 (-) False LOC110509038
LOC110508228 mRNA downstream 338637 33563935 ~ 33568603 (-) True LOC110508228
XM_036966338.1 mRNA upstream 6768 33914350 ~ 33916205 (-) True LOC118944832
XM_021589988.2 mRNA upstream 46115 33953697 ~ 33972737 (-) False LOC110509043
XM_021589989.2 mRNA upstream 46115 33953697 ~ 33972737 (-) True LOC110509043
XM_036966941.1 mRNA upstream 69994 33977576 ~ 33985115 (-) False LOC110509045
XM_021589991.2 mRNA upstream 69994 33977576 ~ 33990790 (-) True LOC110509045
TU2435888 other downstream 508156 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1677026 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1742218 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 132624 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 133856 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 133987 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 137108 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 578287 34485869 ~ 34486176 (-) True G2131621

Expression Profile