RNA id: TU2436281


Basic Information

Item Value
RNA id TU2436281
length 694
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G2130730
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34006810 ~ 34007503 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccagaagctaatcagaagctagttagcttctttactggcaaatcgttagtattcagctaaccacggtttgtggtcatcagctatcctttagctcgaaaatctatcgccagttttgtacggcgcagcgcggctcggaacggaacataccggaccaatttttctctccatgtccctggatttcaactgctctctggacattcatacccggatctcacagctagctagctgctatccgtgtgacagtcggctttcgtcgattccggagcaaacatcgattgttccggtgctagccagctccgtcaatcactcctgagttccatcattcactcctgggctgcagtcacctatccggacccgtttcactgcctacgcggagccccaccgggccttcacaactggactgccgacgttatctacctgaatgagatccggctggctcctctgtcgcgacgttacctgaacgcccatctgcggcccgctaaccgttagctgtcttaccggctgctatctgaatagacaatcggacaatttatttatttttattattattatgttttcttctcgggcctctataactatatctattgttcttatttttgttgttgttgtgtgatttggattaatcccctctaccacacggaaccccactaatctactgaccgaacgcaagaggtggctaacaacagactccatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2436278 lncRNA upstream 2765 34003836 ~ 34004045 (+) True G2130727
TU2436275 lncRNA upstream 6286 33999811 ~ 34000524 (+) True G2130725
TU2436231 lncRNA upstream 13145 33953703 ~ 33993665 (+) True G2130689
TU2436247 lncRNA upstream 44353 33962234 ~ 33962457 (+) True G2130704
TU2436237 lncRNA upstream 61159 33945451 ~ 33945651 (+) True G2130695
TU2436288 lncRNA downstream 8457 34015960 ~ 34016322 (+) False LOC110509047
TU2436286 lncRNA downstream 9837 34017340 ~ 34018371 (+) True LOC110509047
TU2436302 lncRNA downstream 33645 34041148 ~ 34069094 (+) False G2130749
TU2436312 lncRNA downstream 34449 34041952 ~ 34069094 (+) False G2130749
TU2436315 lncRNA downstream 36960 34044463 ~ 34071017 (+) False G2130750
XM_036966765.1 mRNA upstream 68783 33928219 ~ 33938027 (+) True LOC110509044
XM_036966689.1 mRNA upstream 156380 33811613 ~ 33850430 (+) False cfap57
XM_036966690.1 mRNA upstream 157046 33811613 ~ 33849764 (+) False cfap57
XR_005040239.1 mRNA upstream 158533 33811613 ~ 33848277 (+) False cfap57
XM_036966707.1 mRNA upstream 196013 33808020 ~ 33810797 (+) False LOC110508288
XM_021589994.2 mRNA downstream 6392 34013895 ~ 34018374 (+) False LOC110509047
XM_036966899.1 mRNA downstream 22339 34029842 ~ 34035930 (+) False LOC110509049
XM_036966900.1 mRNA downstream 22339 34029842 ~ 34035930 (+) True LOC110509049
XM_036966852.1 mRNA downstream 120127 34127630 ~ 34173167 (+) False LOC110509059
XM_036966854.1 mRNA downstream 120127 34127630 ~ 34173167 (+) False LOC110509059
TU2435288 other upstream 277282 33729148 ~ 33729528 (+) True G2129859
TU2435171 other upstream 430840 33572108 ~ 33575970 (+) False G2129765
TU2435103 other upstream 553937 33452212 ~ 33452873 (+) True G2129724
TU2435087 other upstream 574703 33431751 ~ 33432107 (+) True G2129708
TU2434998 other upstream 697819 33308098 ~ 33308991 (+) True G2129639
TU2436282 other downstream 128 34007631 ~ 34008262 (+) True G2130731
TU2436301 other downstream 31289 34038792 ~ 34069094 (+) False G2130749
TU2436308 other downstream 31289 34038792 ~ 34069094 (+) False G2130749
TU2436310 other downstream 31289 34038792 ~ 34069094 (+) False G2130749
TU2436311 other downstream 31289 34038792 ~ 34069094 (+) False G2130749

Expression Profile