RNA id: TU2436431


Basic Information

Item Value
RNA id TU2436431
length 230
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G2130859
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34021828 ~ 34022057 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGTGTTGCACCTGTGTCTATAACATTAGCTGCTAGTaatgcagtttttttttaaagatataacTTTAGCCATGGAGAATTGCAaatatgttgctactgctctcaataacattgcttccctgaatttatcaggcgctatcgacaaaggactggggaaaaagttgtgatggactactttctggacgACGATCGTGCCGTGCAATGCTGGCTGACTCACTCTGAAAATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2436429 lncRNA downstream 1085 34020505 ~ 34020743 (-) True G2130857
TU2436428 lncRNA downstream 1562 34020049 ~ 34020266 (-) True G2130856
TU2436427 lncRNA downstream 2396 34019195 ~ 34019432 (-) True G2130855
TU2436426 lncRNA downstream 4838 34016298 ~ 34016990 (-) True G2130854
TU2436424 lncRNA downstream 6147 34014824 ~ 34015681 (-) True G2130852
TU2436437 lncRNA upstream 6462 34028519 ~ 34028743 (-) True G2130865
TU2436344 lncRNA upstream 15006 34037063 ~ 34038670 (-) True G2130775
TU2436709 lncRNA upstream 71487 34093544 ~ 34094130 (-) True G2131112
TU2436749 lncRNA upstream 120001 34142058 ~ 34207960 (-) True G2131151
TU2436761 lncRNA upstream 147294 34169351 ~ 34173099 (-) True G2131161
XM_021589993.2 mRNA downstream 20972 33997091 ~ 34000856 (-) True LOC110509046
XR_005040258.1 mRNA downstream 23812 33997091 ~ 33998016 (-) False LOC110509046
XM_021589991.2 mRNA downstream 31038 33977576 ~ 33990790 (-) True LOC110509045
XM_036966941.1 mRNA downstream 36713 33977576 ~ 33985115 (-) False LOC110509045
XM_021589989.2 mRNA downstream 49091 33953697 ~ 33972737 (-) True LOC110509043
XM_021589999.2 mRNA upstream 16731 34038788 ~ 34058344 (-) False LOC110509052
XM_036966608.1 mRNA upstream 16731 34038788 ~ 34058344 (-) False LOC110509052
XM_036966339.1 mRNA upstream 43482 34065539 ~ 34075144 (-) True LOC110509051
XR_005040274.1 mRNA upstream 225888 34247945 ~ 34250438 (-) False LOC118944872
XR_005040273.1 mRNA upstream 225894 34247951 ~ 34250438 (-) True LOC118944872
TU2435888 other downstream 622744 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1791614 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1856806 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 18149 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 19381 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 19512 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 22633 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 463812 34485869 ~ 34486176 (-) True G2131621

Expression Profile