RNA id: TU2436344


Basic Information

Item Value
RNA id TU2436344
length 1532
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G2130775
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34037063 ~ 34038670 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATTATAGTCCAGGAAGAGGCTTAATGTCTGTGAGGGAACATGACCCTACATGTATTATAGTCCAGGAAGAGGCTTAATGTCTGTGAGGGAACATGACCCTACATGTATTATAGTCCAGGAAGAGGCTTAATGTCTGTGAGGGAACATGACCCTACATGTATTATAGTCCAGGAAGAGGCTTAATGTCTGTGAGGGAACATGACCCTACATGTATTATAGTCCAGGAAGAGGCTTAATGTCTGTGAGGGAACATGACCCTACATGTATTATAGTCCAGGAAGAGGCTTAATGTATGTGAGGGAACATGACCCTTCATGTATTATAGTCCAGGAAGAGGCTTAATGTCTGTGAAGGAACATGACCCTACATGTATTATAGTCCAGGAAGAGGCTTAATGTCTGTGAGGGAACATGACCCTACATGTATTATAGTCCAGGAAGAGGCTTAATGTCTGTGAGGGAACATGACCCTACATGTATTATAGTCCAGGAAGAGGCTTAATGTCTGTGAGGGAACATGACCCTTCATGTATTATAGTCCAGGAAGAGGCTTAATGTCTGTGAGGGAACATGACCCTTCATGTATTATAGTCCAGGAAGAGGCTTAATGTCTGTGAGGGAACATGACCCTTCATGTATTATAGTCCAGGAAGAGGCTTAATGTCTGTGAGGGAACATGACCCTACATGTATTATAGTCCAGGAAGAGGCTTAATGTCTGTGAGGGAACATGACCCTACATGTATTATAGTCCAGGAAGAGGCTTAATGTCTGTGAGGGAACATGACCCTACATGTATTATAGTCCAGGAAGAGGCTTAATGTCTGTGAGGGAACATGACCCTACATGTGAAAACTAAGATTAAACTGCAGAGCTGTATTACTCAAAGCTGTTTTATAACCTTTTTGAGAAAATAGATGGTTTCAGTGAGCAGTAAATCTAATTTATCCTCAGTAGTCCTTTCCCTAGTGGAGATGGTCTTAGCTCTCTTCAACCAGCAGGAACAGCAGAAACCAAACATTTACAAGACGACACCTGCAATTCAGTGCATATTTCCACGAGTTTTCAGAAGCACACTTTGGCCTCAAGGTGTAGCCAACTGCTGCTGACAGTTTTAAAAGCAAGTAGCACCCAGTGCAGAATGTAATGATTAGCTGAACCCAGCGACTGCTCTGTCTGGTGACAGGTTTAAAAGCAGGTAGCACCCAGTGGAGAATGTAATGATTAGCTGAACCCAGCGACTGCACTGTCTGGTGACAGGTTTAAAAGCAGGTAGCACCCAGTGGAGAATGTAATGATTAGCTGAACCCAGCGACTGCTCTGTCTGGTGACAGGTTTAAAAGCAGGTAGCACCCAGTGGAGAATGTAATGATTAGCTGAACCCAGTGTTTGTGCTCTGTCTGGTGACAGGTTTAAAAGCAGGTAGCACCCAGTGGAGAATGTAATGATTAGCTGAACCCAGTGTTTGTGCTCTGTCTGGTGACAGGTTTAAAAGCAGGTAGCACCCAGTGGAAAATGTAATGATTAGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2436437 lncRNA downstream 8320 34028519 ~ 34028743 (-) True G2130865
TU2436431 lncRNA downstream 15006 34021828 ~ 34022057 (-) True G2130859
TU2436429 lncRNA downstream 16320 34020505 ~ 34020743 (-) True G2130857
TU2436428 lncRNA downstream 16797 34020049 ~ 34020266 (-) True G2130856
TU2436427 lncRNA downstream 17631 34019195 ~ 34019432 (-) True G2130855
TU2436709 lncRNA upstream 54874 34093544 ~ 34094130 (-) True G2131112
TU2436749 lncRNA upstream 103388 34142058 ~ 34207960 (-) True G2131151
TU2436761 lncRNA upstream 130681 34169351 ~ 34173099 (-) True G2131161
TU2436795 lncRNA upstream 202711 34241381 ~ 34241613 (-) True G2131194
TU2436803 lncRNA upstream 213257 34251927 ~ 34252855 (-) True G2131200
XM_021589993.2 mRNA downstream 36207 33997091 ~ 34000856 (-) True LOC110509046
XR_005040258.1 mRNA downstream 39047 33997091 ~ 33998016 (-) False LOC110509046
XM_021589991.2 mRNA downstream 46273 33977576 ~ 33990790 (-) True LOC110509045
XM_036966941.1 mRNA downstream 51948 33977576 ~ 33985115 (-) False LOC110509045
XM_021589989.2 mRNA downstream 64326 33953697 ~ 33972737 (-) True LOC110509043
XM_021589999.2 mRNA upstream 118 34038788 ~ 34058344 (-) False LOC110509052
XM_036966608.1 mRNA upstream 118 34038788 ~ 34058344 (-) False LOC110509052
XM_036966339.1 mRNA upstream 26869 34065539 ~ 34075144 (-) True LOC110509051
XR_005040274.1 mRNA upstream 209275 34247945 ~ 34250438 (-) False LOC118944872
XR_005040273.1 mRNA upstream 209281 34247951 ~ 34250438 (-) True LOC118944872
TU2435888 other downstream 637979 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1806849 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1872041 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 1536 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 2768 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 2899 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 6020 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 447199 34485869 ~ 34486176 (-) True G2131621

Expression Profile