RNA id: TCONS_00055711


Basic Information

Item Value
RNA id TCONS_00055711
length 1461
RNA type mRNA
GC content 0.34
exon number 5
gene id XLOC_028739
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20037521 ~ 20039635 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTATTCACAATCACTCTGTTCAGTAAATCGGTTCTGCTGTTTGATCAACAACATGATTTCTGTTTGGATTTTAAGTTCTCTGATCCTCAGCTACACTTTTGGGCGTCCCATTTTCAATAACACAAGTGGCTTGAATATGGAAACTTCTACCAATGCTACAGAGAGGAACTCCACAAACAGCACGTCTCTGATTCTTAACAATACTTCTGGTTTTCCCAATACCAGTAACAAAAGAAATGATATGTTTCCGGGTCCCGGTTATATTGGATTCTGCTGGTTACCATCCTGTGCTTTGCATAATTTGGTTGACAGAATGCAGTCCGGGGATGAGACGGCAGGGAAAATTACAGAAGACGCATTGGGaccaggaaaaaaataataatttaaagaaatgttacAGAAGAagtattacttttatttgatagtttATTTTGCTTCTAAAAATCCCTTTTCTTTTAACATTGCTTCTATAttcaaaagcattttattttaacttgaCATATGTTGATGTGTAAAGAGCACATGTATGTAGAAATATGTGTTATCAACACTTAGCTTGACAGAATGTTTAATTTCAACACCAAATacagcaataatatatatatatatatatatatatatatatatatatatatttccttctGTTTTAAAAGACATTTCATTGATAATCGAGAATCATGCTGTTTCTTCAATCAAAAATTCAATCTAAAGcttttcttaaaaacatttaaagctaTGTACACTAAAGATCtatgaaaatacagtaaaaagtcATTGTGACAACTACAAATACTTAGCTGCAGTTGCATATGATTACCAGAAGAGGGTAATCTATTATTAGAGTTCAAACATGAACAATACCCACGTTTAATTATTTGTCCATGTGTAGCGACGTATTCAATAAGGCTCTTTGCCAGCATGTTAGTGCTTGACTTTATTGCTGATGCCCTCTAAGTACGGGCACAGCTGGCACTAGAGGACATTTCACCACTTTACGTGGACACAAACATTGTGCAACTGTGTCAATATCCTAGTTGTCAGGTTTATGACACCAtataaaaatgtgcaaataatcaAACATCGTCAAACATATCTGCTCCGACATAACAGCGTCAACTTTTAAAGCTTTTTCCACCTCAGAGGTAAAGGTAAAACAATCAaagattgtatgttttttttccattatcTCACTAcagacatcatttaaaaaaacaaaaaacaaaactgtttgaCTTTAAAGCTGCAGGTTAATTttaatgttgctgttttttatgCCCAtacagtttgtttattttttcactatAAAGCACTTTGTCAGCCTTGTGGCAGCTGGAAACGTGCTATAGCCTATAAATAAATGGAACTTGAACTTCAACTAATTTTTAAGGTGGTGTCATGATTCTCCTTAGTGCATCCATCCAATATTATTAACAAATTACTTTCAGCGGACCATGACCA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000179191

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058196 lncRNA downstream 136388 19900015 ~ 19901133 (-) True XLOC_028736
TCONS_00058195 lncRNA downstream 498431 19534461 ~ 19539090 (-) True XLOC_028733
TCONS_00058194 lncRNA downstream 667736 19366363 ~ 19369785 (-) True XLOC_028731
TCONS_00057351 lncRNA downstream 667781 19284658 ~ 19369740 (-) False XLOC_028731
TCONS_00058198 lncRNA upstream 5232 20044867 ~ 20047402 (-) False XLOC_028741
TCONS_00058200 lncRNA upstream 5232 20044867 ~ 20047884 (-) False XLOC_028741
TCONS_00058199 lncRNA upstream 5232 20044867 ~ 20047884 (-) True XLOC_028741
TCONS_00058201 lncRNA upstream 83278 20122913 ~ 20124058 (-) True XLOC_028746
TCONS_00055720 lncRNA upstream 86553 20126188 ~ 20127945 (-) False XLOC_028747
TCONS_00055710 mRNA downstream 9950 19950480 ~ 20027571 (-) True XLOC_028738
TCONS_00055709 mRNA downstream 55402 19946294 ~ 19982119 (-) False XLOC_028738
TCONS_00055707 mRNA downstream 116111 19903784 ~ 19921410 (-) False XLOC_028737
TCONS_00055708 mRNA downstream 116111 19909818 ~ 19921410 (-) True XLOC_028737
TCONS_00055706 mRNA downstream 153081 19768679 ~ 19884440 (-) False XLOC_028735
TCONS_00055712 mRNA upstream 3172 20042807 ~ 20043484 (-) True XLOC_028740
TCONS_00055713 mRNA upstream 9625 20049260 ~ 20051141 (-) False XLOC_028742
TCONS_00055715 mRNA upstream 31493 20071128 ~ 20081621 (-) True XLOC_028743
TCONS_00055716 mRNA upstream 62357 20101992 ~ 20108833 (-) True XLOC_028744
TCONS_00055717 mRNA upstream 71286 20110921 ~ 20118468 (-) False XLOC_028745
TCONS_00055699 other downstream 989966 19047466 ~ 19047555 (-) True XLOC_028730
TCONS_00055684 other downstream 1383260 18654155 ~ 18654261 (-) True XLOC_028720
TCONS_00055683 other downstream 1384280 18653148 ~ 18653241 (-) True XLOC_028719
TCONS_00055676 other downstream 1430983 18597660 ~ 18606538 (-) False XLOC_028717
TCONS_00055674 other downstream 1442381 18593830 ~ 18595140 (-) True XLOC_028716
TCONS_00055714 other upstream 9689 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055724 other upstream 136508 20176143 ~ 20177868 (-) False XLOC_028749
TCONS_00055737 other upstream 356414 20396049 ~ 20396170 (-) True XLOC_028756
TCONS_00055751 other upstream 1612036 21651671 ~ 21652632 (-) True XLOC_028763
TCONS_00055755 other upstream 2196723 22236358 ~ 22237294 (-) True XLOC_028767

Expression Profile

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