RNA id: TU2436761


Basic Information

Item Value
RNA id TU2436761
length 1005
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G2131161
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34169351 ~ 34173099 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGAATTTTGTGGTCTACCATTTTCAAACATCTGAAAACTGCTCCCTGCGAGACTAATTTCGAAAACCTTTTTTCTCATGTCCCCTAACCCATTTCATAGGTGGCCATACAACAGTTTCAACACATAAATTAAAATGCAAAGTCACAATTCCAACAAAACATTTCTTCTGAATTTTGCCATTCACGTTTTAGACGATAATACCTTGAAACCGGAACTATTAGTCTGAGAACAATGAGCATGTTTACACGCACACTAATATAATTCGATATCAAACTGATTTATGACAGTAGACAGATTATACAATAGTCATGTAACATccttactctgtttatcttaatcGGTGTAAGGTCAAAATAAAAGTAAGCATATGCCgattaaaaaaaagaagacgCTTTTCTGACATTTATTTTGATTGCCGATTTTCGGCATTGATCAGAGTGCCATCAGATAGCCTGATTTTCATATGCGTCCATGTACACAGGATTATTAGAGAAATCGTTcctcttgcaaagcatgtaaacgttttaatttaactattatattaatctgactatccacaatcACAATATTGTGTGCATGTAAGCCACACTCAATGAGAGCAACTCTTTTTTTCACACCCTGCATTAATTCATTTCTTAGATGACTAGAATAAAATACAGTAGTCTGGTACATGTATTGTATGAAATTAAAGTACAACCTTGTAGTACCGCATCAATACGCACACAGTGTTGTGTCTTGACGGGCAAACAAGCACACTGGTCCATGAGTCTTTCTCTCTGAGAGTCTTTTCCTTTTTTCCATTGATTGGTCATTCAGGTCCTGATGTTGTCTATTGATTCTTCAAACCACCAATGAGGCTTTATTTTTACCTCCCATATCGTTAGTGCCTTCATCGTCAAAGACATCCTCGTTGGCTTCATCTGTCATCTCTCCCGCCTCCAAGTCTTCGGAGAGGTCCGCTGTTTTGGCACGGAGACACTTATACACTCCTCCCTGTTTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2436709 lncRNA downstream 75221 34093544 ~ 34094130 (-) True G2131112
TU2436344 lncRNA downstream 130681 34037063 ~ 34038670 (-) True G2130775
TU2436437 lncRNA downstream 140608 34028519 ~ 34028743 (-) True G2130865
TU2436431 lncRNA downstream 147294 34021828 ~ 34022057 (-) True G2130859
TU2436429 lncRNA downstream 148608 34020505 ~ 34020743 (-) True G2130857
TU2436795 lncRNA upstream 68282 34241381 ~ 34241613 (-) True G2131194
TU2436803 lncRNA upstream 78828 34251927 ~ 34252855 (-) True G2131200
TU2436811 lncRNA upstream 81508 34254607 ~ 34255349 (-) True G2131203
TU2436812 lncRNA upstream 87454 34260553 ~ 34261277 (-) True G2131204
TU2436818 lncRNA upstream 88676 34261775 ~ 34262390 (-) True G2131210
XM_036966339.1 mRNA downstream 94207 34065539 ~ 34075144 (-) True LOC110509051
XM_021589999.2 mRNA downstream 111007 34038788 ~ 34058344 (-) False LOC110509052
XM_036966608.1 mRNA downstream 111007 34038788 ~ 34058344 (-) False LOC110509052
XM_021589993.2 mRNA downstream 168495 33997091 ~ 34000856 (-) True LOC110509046
XR_005040258.1 mRNA downstream 171335 33997091 ~ 33998016 (-) False LOC110509046
XR_005040274.1 mRNA upstream 74846 34247945 ~ 34250438 (-) False LOC118944872
XR_005040273.1 mRNA upstream 74852 34247951 ~ 34250438 (-) True LOC118944872
XM_036967153.1 mRNA upstream 85096 34258195 ~ 34268977 (-) False zgc:110366
XM_036967154.1 mRNA upstream 85096 34258195 ~ 34268991 (-) False zgc:110366
XM_021590015.2 mRNA upstream 85096 34258195 ~ 34269017 (-) False zgc:110366
TU2436349 other downstream 101278 34041438 ~ 34068073 (-) True G2130780
TU2436339 other downstream 102686 34040206 ~ 34066665 (-) True G2130771
TU2436347 other downstream 111081 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 126786 34041569 ~ 34042565 (-) False LOC110509052
TU2435888 other downstream 770267 33398547 ~ 33399084 (-) True G2130393
TU2437325 other upstream 312770 34485869 ~ 34486176 (-) True G2131621
TU2437347 other upstream 343423 34516522 ~ 34518129 (-) False G2131641
TU2437349 other upstream 343423 34516522 ~ 34518129 (-) True G2131641
TU2438804 other upstream 1832390 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 1842963 36016062 ~ 36017832 (-) True lyrm4

Expression Profile