RNA id: TU2436803



Basic Information


Item Value
RNA id TU2436803
length 356
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G2131200
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34251927 ~ 34252855 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTCTGGCCACTCCCTCGTCTCCACCAATCAGCACCATCTCTCACCTGTGCTCGCAGCCCCATGATGAGTTGGACTCTCTCCCTGTAACTCATCATATCAGGAACTATCTCCAACACAGTGGTGACAAACTCCTCCACCAACCCGTAGTCCATTACGTCTCTCTGCTGAACAACTTGCCATAGAGCTGCAGACACCAGCCGCAGGGGAGGAACCAACAGACGCAGAGATGATAGGGGGAGACCTACTTCTTCAATCAGGATATGGTGTTTTCGCATTTCGAGCTTTCAGTGCCAGTATACTtggattcaaaataaaataatgtgaGCTTTGTTCGTGGATGTGTTTCCTTCTGTCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2436795 lncRNA downstream 10314 34241381 ~ 34241613 (-) True G2131194
TU2436749 lncRNA downstream 43967 34142058 ~ 34207960 (-) True G2131151
TU2436761 lncRNA downstream 78828 34169351 ~ 34173099 (-) True G2131161
TU2436709 lncRNA downstream 157797 34093544 ~ 34094130 (-) True G2131112
TU2436344 lncRNA downstream 213257 34037063 ~ 34038670 (-) True G2130775
TU2436811 lncRNA upstream 1752 34254607 ~ 34255349 (-) True G2131203
TU2436812 lncRNA upstream 7698 34260553 ~ 34261277 (-) True G2131204
TU2436818 lncRNA upstream 8920 34261775 ~ 34262390 (-) True G2131210
TU2436820 lncRNA upstream 10967 34263822 ~ 34265601 (-) True G2131211
TU2436828 lncRNA upstream 26306 34279161 ~ 34279491 (-) True G2131215
XR_005040274.1 mRNA downstream 1489 34247945 ~ 34250438 (-) False LOC118944872
XR_005040273.1 mRNA downstream 1489 34247951 ~ 34250438 (-) True LOC118944872
XM_036966339.1 mRNA downstream 176783 34065539 ~ 34075144 (-) True LOC110509051
XM_021589999.2 mRNA downstream 193583 34038788 ~ 34058344 (-) False LOC110509052
XM_036966608.1 mRNA downstream 193583 34038788 ~ 34058344 (-) False LOC110509052
XM_036967153.1 mRNA upstream 5340 34258195 ~ 34268977 (-) False zgc:110366
XM_036967154.1 mRNA upstream 5340 34258195 ~ 34268991 (-) False zgc:110366
XM_021590015.2 mRNA upstream 5340 34258195 ~ 34269017 (-) False zgc:110366
XM_036967152.1 mRNA upstream 5340 34258195 ~ 34269017 (-) False zgc:110366
XM_021590014.2 mRNA upstream 5345 34258200 ~ 34269017 (-) True zgc:110366
TU2436349 other downstream 183854 34041438 ~ 34068073 (-) True G2130780
TU2436339 other downstream 185262 34040206 ~ 34066665 (-) True G2130771
TU2436347 other downstream 193657 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 209362 34041569 ~ 34042565 (-) False LOC110509052
TU2435888 other downstream 852843 33398547 ~ 33399084 (-) True G2130393
TU2437325 other upstream 233014 34485869 ~ 34486176 (-) True G2131621
TU2437347 other upstream 263667 34516522 ~ 34518129 (-) False G2131641
TU2437349 other upstream 263667 34516522 ~ 34518129 (-) True G2131641
TU2438804 other upstream 1752634 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 1763207 36016062 ~ 36017832 (-) True lyrm4

Expression Profile