RNA id: TU2436902


Basic Information

Item Value
RNA id TU2436902
length 2729
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G2131281
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34405857 ~ 34409452 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTAACTTCATTTCTGAATTTAAATatcaatgcatttttttttttaatctcacAATTCATAATGCATAAATGCGTGTTTTCCATTGACGGTTAAATCATTTCCAAACCAAAATATAATATCCCTTTACACAGTATTGAGCCCGTGGGTAGTCCCTCTGGCATTTTCATCTTGTCCCCAAAAGTGTCCTCTTTGTTCACTTCTATTACACCTATTTTactctcactctctatcctcAACCCCTCCTTTCTCTGTAAAGTACATCCATTTTTCATGCAATGCTTCGTCGcatccccccTGCCTTAACAACTGGTTTGACCTTCATATATCTCCTTTGTATATACAGCCGTTCTCCTACATTTGATTTATGAAATGACAGGGTCTCGTTTCCACAATGCAGAAAATGGCTCATTTAATGGCTCACCAAACCTACTGCAATGGACGCCATTGGGATGCCAGCCCCTACTGCGATGGAAGCCATTAGGATGCCAGCCCCTACTGCGATGGAAGCCATTAGGATGCCAGCCTGGAAGTACAAAACAGTGACATATTTACAGACTCTCAGGGCAAACCTTCTGGCgtccaaatgttttattttcctgGGTTTTGGATGGCTGGGCTCCATCCCGTTGTGGTAGGCTGGGCTCCATCCCGTTGTGGTAGGCTGGGCTCCATCCCGTTGTGGTAGGCTGGGCTCCATCCCGTTGTAGTAGGCTGTTATTGAGTACAGTATCGTAGGTGAAATATTAACAATGAAAGCGGGTTTCCCAGGGGCTTTGTCCAAAATCCTCTTAAAATACTTCCTTTATTTTTTTTTCCTTTACCTTGTATATATAAAGATATAAAGAGACTACTTCTATGAAATTAATACGCCACAACCCATCAACAAGACACAAGGAGAGGAAGCTTCTTAAGAGTATTGGGACGAATACTTGTCTGAGACTTGCCAGCAATCCTACCTTCTCTGATGCATACAGTACTGTGTCTATGTCTTGCCCTTAAACAAGCCACAACTTGCCTTCCTAAGGACATGTCCATGATTTCTTTGTACCGACTAAAAGCATTCTCTGATCACTGATCATCAAGTCTTTGTCAAAGCGCATGCTGAGGTGAAATACACCAGTTTCAAGTATTCATGAAAGAATCCTTGATTGGCGGATGCTAGCCAAGTTTCCCTGTTTTCTGGAGATAATATTACATTTTCTCCCATAGGATTGGCCAAGCTAGTTCTTATtagagacacatccccttacTAGTGCTGGTTCACCTAACAAAAACAAACCTGAAGTTCTATCTACCTTTTTTCCTCCTGCCTACAAACACGTTGCCAGAGTATTGATGCTATTTCAAGGCTATCCTTTCTTGTTTCTTTTCCCTCCTGACCATTGAGTTGACAGAACGGGATTGTTGAGAGTAATGGTGCGTTCGAGTGGTCCTCGGAATCTCGGTATTTCCCAATTGGTTCCCAAGTTGTAAATTATGGCATGAGTGCGCTCGTGTTCTAATGAAGTTTGGAATAACTCTTCAACCAATGAGATTCTAGCTAGATGGCTAATCTAGCTAATGTTGCTTACGTTGACAATGTGTCAAACTATATACTGTACGGATCCACTAAGCTACGTTAATCACATGGTTAAGGTTGTAAATGGTTTTCTCCTACCGTCTAGTGGTTGAAAAGGTGAAGGGCCAGCGATGAAACGGCACAACTCTGGACCAtgtttcccacttgtgtttccgACTTTGAGGATCGTTCAAGTGGTTATTTCCGAGTCGGGAACTTGTATTTCCACATTTCCGATAGCACTCGAAAGCACCATAATATGGTAGATGCCTGCTGTGAGGCTTGTTGTAGTAGCCCCTCTGTATTGCTTTTAGTTGTCTAGTCCTGTAATACCGAAGAGTGTGAGGAGACTCCAAATTAGAGTATTGAGATCCACCCAACGTATTCCTCACCGAAAGGACAATCACCTGAGCAAAACCCATCCCACCCACCCATACCTGTTCCTTCCGAGCCCAACAGCGAGCTCTCATATACATTACATGTTTACCCTCACACCAGTGAAAAAGGGCATTCACTGTCACGCAATATGAACACAAACAATTTTTCAAACTTCTACAGTCTCAAACGAAAAACAGAATAACAATGATACTAAAATTGGGATGATGAGTTAGTCAACACATacataatattattattaatgGACAATAAAACTTGTGAGCGTGTCATAGCATTCAGAAAATCAACGCATGGGAAATCAAACGTGGTTTAAAGCAAATTTTTCACAGCATAAAAATTGGAAACGATAGATATTTGTATTGTGAAGAGACCACCATTTCTTTGTCTTGTCAcagctttttttttcttttttgcaTAAAACGTAGGTCAAGTCCTGATTGAAAATGTTTGTAGTCGCTTTTTTGTTTTCCTCTGGGTTTATCTTGATATTTGTCTAAAAGATTTTCACAGGCAAGAGTTTTTTTGTGGTCTTGGGTGTAGCTCCTCCCCCTCGTGGCGGTCCATCCCTTCAGAGGGCATGGTGGTGAGGGGAGTTTGTGgcccctcccccctctgtttAAGAGAGGGGGGACCGGGCACCCTAGTGGCCCCCCACCCTTGGGGCCCCGCTGCTAGGAATTCTGGTTGACAGCTTTCCCTCCGTTCATGGTGGGAGTCCCTGAGTTCTTCCTGGAGCGCTGTTTCTCCTCGATCTCATGCAGCGACGGCTCcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2436906 lncRNA downstream 519 34405003 ~ 34405338 (-) True G2131285
TU2436904 lncRNA downstream 1809 34403636 ~ 34404048 (-) True G2131283
TU2436903 lncRNA downstream 4355 34400956 ~ 34401502 (-) True G2131282
TU2436900 lncRNA downstream 7870 34397717 ~ 34397987 (-) True G2131279
TU2436816 lncRNA downstream 26302 34375912 ~ 34379555 (-) True G2131208
TU2436949 lncRNA upstream 73657 34483109 ~ 34483386 (-) True G2131318
TU2437323 lncRNA upstream 74246 34483698 ~ 34483954 (-) True G2131619
TU2437327 lncRNA upstream 84667 34494119 ~ 34494644 (-) True G2131623
TU2437355 lncRNA upstream 159050 34568502 ~ 34570391 (-) True G2131643
TU2437431 lncRNA upstream 177266 34586718 ~ 34587111 (-) True G2131691
XM_021590008.2 mRNA downstream 84267 34304706 ~ 34321590 (-) False LOC110509056
XM_021590021.2 mRNA downstream 105229 34284268 ~ 34300628 (-) True vcam1a
XM_021590015.2 mRNA downstream 136840 34258195 ~ 34269017 (-) False zgc:110366
XM_036966668.1 mRNA upstream 12720 34422172 ~ 34481857 (-) False LOC110509050
XM_036966669.1 mRNA upstream 16155 34425607 ~ 34481859 (-) True LOC110509050
XM_036966882.1 mRNA upstream 162581 34572033 ~ 34604132 (-) False LOC110508232
XM_036966883.1 mRNA upstream 162581 34572033 ~ 34604132 (-) True LOC110508232
XM_036966648.1 mRNA upstream 303815 34713267 ~ 34728197 (-) True LOC110509072
TU2436349 other downstream 337784 34041438 ~ 34068073 (-) True G2130780
TU2436339 other downstream 339192 34040206 ~ 34066665 (-) True G2130771
TU2436347 other downstream 347587 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 363292 34041569 ~ 34042565 (-) False LOC110509052
TU2435888 other downstream 1006773 33398547 ~ 33399084 (-) True G2130393
TU2437325 other upstream 76417 34485869 ~ 34486176 (-) True G2131621
TU2437347 other upstream 107070 34516522 ~ 34518129 (-) False G2131641
TU2437349 other upstream 107070 34516522 ~ 34518129 (-) True G2131641
TU2438804 other upstream 1596037 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 1606610 36016062 ~ 36017832 (-) True lyrm4

Expression Profile