RNA id: TU2437355


Basic Information

Item Value
RNA id TU2437355
length 1832
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G2131643
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34568502 ~ 34570391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGTAATGAGATGGGTTTGCTGGCATGTAGTACACAAGTGACAATTTTTGATGACATTACACGAAGATGGAAACAAGGGTGGGTCGGGGAGATAAACGTAAACCTATTATCCCAAACCAGTCAAAGCCTGTTGAGGTCAATTGTGGATGGTGACGTTGCACTTTGCAAGGGTTGGTTATTTAATGTGGGTTGGTGGCAATAGCTGGCACAGGTCAGCTGTCCTACTCCGCCAGGCACATTGAGGGCTTCTGTTCACAGATTAGATACTGTACTCAATCCACACCAACAATCAGCCCGAACAATGATCGCCTGAGATTTTAGACAAATACGTATGCTTACAGCAGAATATGTGTATATTATGCACTTTCTTGAGAAATATCTTTGGAATATATGCTTATATAAATAtgcttatatatattttttgtgagtAGTAGAGCTGTGCCATGTAATGCGTTATCATCGGTTGGCTGGGTGGTATGGTCGCAGACGATTGGCTGTCTGTGACATGCCATCACCCATGACTGGCTATCTGTGATGCATTACCCCCTGGGATTAGGCATCAGATGATAATTACCTATAGCGTGGCCACAGCTCTGCCCAAGTATTAAGAACATAGAACAAGGGTTGCACAAGGACCTACAGATCAAGACTTAAGGTTAATCATTAAAACTGCACTACCCATAACATTCAATTAGGCTGTATCCTCTTTCAATCTCCTGCATCGTCTGCAGTGAATCTTTTTTTTGTACGTAAGAAATGCAATGTCTGcatatcatttttttttcttccccagAATGCCCCTCTGATCTCCTTTTCCTGTCTTGTCCATAGACCTTGCCaggctacccagactccttgctctggtcaaaagctacattagtttcttctccacaatgagtctggatctgagtacctctcCTGACAATTTCTAGAATGGAAATCCGTTCTCGACAATCTGATTGGTCGCAGAAACCAATAGGTTGGGCCAGAGCCCAAACACACGTGGGTAAAGCGACATTTGACAAtttgtcattggctttgatactctgattggttagaaatgatccaatcgctgatgacttttgtacaacacccctcattttTTACATCACAACAAACGACTTCAATGATgtcagtctcagactgaagtctGTAGCGATAaattcagtttgagtcgtcaggcaagcATAGACCAGCATGCACCTGTAGTCAAGGTGAGTCAGGTGTTGCCTCTAACTGCTGGTCCAGTGCCCTCTTTTTTAATGATCTGACCCCAGATCTGTGTTGCGGGCAACTTCTACATGAATCCCTTTGAGGATATTTAAGGTGCAATGCACTGTAGTGACGTTGGACATTGAAATGGATTAGAGACTTAAATCTGCCCATCCATTGGCAGACATGAGCAGCAGGCCAATAGGAATGGAGGAGTAGCATGAACAACCTAACTGGTTAAACCAGTGCAATACCCCTTCCATTGATAAATCAACACGGCGGTCCGCACCAAGTCCCTtatgcctgtgcgtgtgtgtgttagtgtgtgccgAGCTACACTGTATGCAGGTCAACTCTGAAATGATTGTTTGAAACATGAACATTTCTTACAGCGCAGGTCCGAAATGTATAACGATGTTTAActatcttttttttttgtgtgtgtaaatAATGTGCAGtgtgaaagctagagagagaacacagcgcTGACTGTGCTCTTCATTCTGAAAAGGaaaagaagaaagagaagaaaaaaaacatgtttgagAAAGAAGTACTGTATGCTGATTGGTTCTGTTGTCGAGAGAAataaatatgaacttggtctCACTGTGGAAGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437327 lncRNA downstream 73858 34494119 ~ 34494644 (-) True G2131623
TU2437323 lncRNA downstream 84548 34483698 ~ 34483954 (-) True G2131619
TU2436949 lncRNA downstream 85116 34483109 ~ 34483386 (-) True G2131318
TU2436902 lncRNA downstream 159050 34405857 ~ 34409452 (-) True G2131281
TU2436906 lncRNA downstream 163164 34405003 ~ 34405338 (-) True G2131285
TU2437431 lncRNA upstream 16327 34586718 ~ 34587111 (-) True G2131691
TU2437436 lncRNA upstream 26864 34597255 ~ 34597523 (-) True G2131696
TU2437439 lncRNA upstream 38639 34609030 ~ 34609835 (-) True G2131699
TU2437442 lncRNA upstream 49253 34619644 ~ 34619924 (-) True G2131702
TU2437483 lncRNA upstream 111887 34682278 ~ 34682482 (-) True G2131735
XM_036966669.1 mRNA downstream 86643 34425607 ~ 34481859 (-) True LOC110509050
XM_036966668.1 mRNA downstream 86645 34422172 ~ 34481857 (-) False LOC110509050
XM_021590008.2 mRNA downstream 246912 34304706 ~ 34321590 (-) False LOC110509056
XM_021590021.2 mRNA downstream 267874 34284268 ~ 34300628 (-) True vcam1a
XM_021590014.2 mRNA downstream 299485 34258200 ~ 34269017 (-) True zgc:110366
XM_036966882.1 mRNA upstream 1642 34572033 ~ 34604132 (-) False LOC110508232
XM_036966883.1 mRNA upstream 1642 34572033 ~ 34604132 (-) True LOC110508232
XM_036966648.1 mRNA upstream 142876 34713267 ~ 34728197 (-) True LOC110509072
XM_036966430.1 mRNA upstream 167071 34737462 ~ 34761420 (-) False gk5
XR_005040214.1 mRNA upstream 167071 34737462 ~ 34761420 (-) False gk5
TU2437347 other downstream 50373 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 50373 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 82326 34485869 ~ 34486176 (-) True G2131621
TU2436349 other downstream 500429 34041438 ~ 34068073 (-) True G2130780
TU2436339 other downstream 501837 34040206 ~ 34066665 (-) True G2130771
TU2438804 other upstream 1435098 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 1445671 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 1453389 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 1453399 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 1653822 36224213 ~ 36225379 (-) True G2132971

Expression Profile