RNA id: TU2437016


Basic Information

Item Value
RNA id TU2437016
length 228
lncRNA type intronic
GC content 0.43
exon number 1
gene id G2131379
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34597245 ~ 34597472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATCACATATCTTCCATCATTACCCAGTTAACACGTATGTAACGAttgtcgttggtggaagaaggtgaggaccaaggtgcagcgtggtacgtgttcggcATTTTATTAAATATAACTGAACACTAGATAACAAAAGGCACAACTGaaccagctccgtcaggtgcaacacacactaaacagaaaataactacccacaactcatagtgggaaaacaggctgcctaagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437013 lncRNA upstream 2144 34594856 ~ 34595101 (+) True G2131376
TU2437010 lncRNA upstream 7103 34589889 ~ 34590142 (+) True G2131373
TU2437008 lncRNA upstream 7812 34589164 ~ 34589433 (+) True G2131371
TU2437007 lncRNA upstream 9466 34587522 ~ 34587779 (+) True G2131370
TU2436991 lncRNA upstream 48139 34548534 ~ 34549106 (+) True G2131354
TU2437045 lncRNA downstream 32304 34629776 ~ 34632550 (+) True LOC110509061
TU2437070 lncRNA downstream 67476 34664948 ~ 34665217 (+) True G2131410
TU2437073 lncRNA downstream 71805 34669277 ~ 34670019 (+) True G2131413
TU2437077 lncRNA downstream 90411 34687883 ~ 34688100 (+) True G2131417
TU2437079 lncRNA downstream 93033 34690505 ~ 34690704 (+) True G2131419
XM_036966381.1 mRNA upstream 28893 34499546 ~ 34568352 (+) True LOC110508231
XM_036966250.1 mRNA upstream 187754 34352592 ~ 34409491 (+) False LOC110508236
XM_036966247.1 mRNA upstream 187754 34370862 ~ 34409491 (+) False LOC110508236
XM_036966249.1 mRNA upstream 187754 34370863 ~ 34409491 (+) False LOC110508236
XM_021590010.2 mRNA upstream 318544 34269061 ~ 34278701 (+) True extl2
XM_036966788.1 mRNA downstream 24383 34621855 ~ 34632610 (+) False LOC110509061
XM_036966787.1 mRNA downstream 24384 34621856 ~ 34632610 (+) False LOC110509061
XM_036966785.1 mRNA downstream 24385 34621857 ~ 34632610 (+) False LOC110509061
XM_036966786.1 mRNA downstream 24388 34621860 ~ 34632610 (+) False LOC110509061
XM_021590007.2 mRNA downstream 42547 34640019 ~ 34646660 (+) False agfg1b
TU2436600 other upstream 223235 34370861 ~ 34374010 (+) True LOC110508236
TU2436308 other upstream 528151 34038792 ~ 34069094 (+) False G2130749
TU2437020 other downstream 6013 34603485 ~ 34604953 (+) True G2131383
TU2437076 other downstream 89799 34687271 ~ 34687640 (+) True G2131416
TU2437109 other downstream 104734 34702206 ~ 34783418 (+) True G2131426
TU2437711 other downstream 494227 35091699 ~ 35093034 (+) True G2131933
TU2438124 other downstream 1102374 35699846 ~ 35700235 (+) True G2132291

Expression Profile