RNA id: TU2437442


Basic Information

Item Value
RNA id TU2437442
length 281
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G2131702
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34619644 ~ 34619924 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtatagtgcatatgttatcgtgtgtatgcatgtgcctgtgcctgggctcccgagtggtgcagcagtctaaggcactgcatctcagtgctagaggtgtcactacagtccctggttcaatttcaggctgtatcacatccagctgtgaagAACTGCAAAACTGCTGGGTTTGTCATgctcaactgtttcctgtgtgtagctAGAACCCAAAGGACACTCAGCCAACTTGgcataactgtgggaagcattggggcggcaggtagcctagtggttagac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437439 lncRNA downstream 9809 34609030 ~ 34609835 (-) True G2131699
TU2437436 lncRNA downstream 22121 34597255 ~ 34597523 (-) True G2131696
TU2437431 lncRNA downstream 32533 34586718 ~ 34587111 (-) True G2131691
TU2437355 lncRNA downstream 49253 34568502 ~ 34570391 (-) True G2131643
TU2437327 lncRNA downstream 125000 34494119 ~ 34494644 (-) True G2131623
TU2437483 lncRNA upstream 62354 34682278 ~ 34682482 (-) True G2131735
TU2437484 lncRNA upstream 65057 34684981 ~ 34685268 (-) True G2131736
TU2437565 lncRNA upstream 233636 34853560 ~ 34854537 (-) True G2131809
TU2437574 lncRNA upstream 246741 34866665 ~ 34867243 (-) True G2131816
TU2437593 lncRNA upstream 255130 34875054 ~ 34875690 (-) True G2131824
XM_036966882.1 mRNA downstream 15512 34572033 ~ 34604132 (-) False LOC110508232
XM_036966883.1 mRNA downstream 15512 34572033 ~ 34604132 (-) True LOC110508232
XM_036966669.1 mRNA downstream 137785 34425607 ~ 34481859 (-) True LOC110509050
XM_036966668.1 mRNA downstream 137787 34422172 ~ 34481857 (-) False LOC110509050
XM_021590008.2 mRNA downstream 298054 34304706 ~ 34321590 (-) False LOC110509056
XM_036966648.1 mRNA upstream 93343 34713267 ~ 34728197 (-) True LOC110509072
XM_036966430.1 mRNA upstream 117538 34737462 ~ 34761420 (-) False gk5
XR_005040214.1 mRNA upstream 117538 34737462 ~ 34761420 (-) False gk5
XM_036966431.1 mRNA upstream 117538 34737462 ~ 34761422 (-) False gk5
XM_036966432.1 mRNA upstream 122329 34742253 ~ 34761423 (-) True gk5
TU2437347 other downstream 101515 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 101515 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 133468 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 561374 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 577079 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 1385565 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 1396138 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 1403856 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 1403866 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 1604289 36224213 ~ 36225379 (-) True G2132971

Expression Profile