RNA id: TU2437073



Basic Information


Item Value
RNA id TU2437073
length 743
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G2131413
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34669277 ~ 34670019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caccatgtctgtgtcagtAATCTATTTTCTCATTGTTGATTTGATtgacttatttcagcaatttgGTGGTTTTCTGTATCGTCGTCTGTTGGTGGGGTATATTActctgttgtaatgttactggggtatattactctgttgtaatgttactggggtatatcactctgttgtaatgttactggggtatattactctgttgtaatgttactggggtatatcactctgttgtaatgttactggggtatattactctgttgtaatgttactggggtatattactctgttgtaatgttactggggtatatcactctgttgtaatgttactggggtatattactctgttgtaatgttactggggtatattactctgttgtaatgttactggggtatattactctgttgtaatgttactgGGGTATATCACTCTGTTGTAATGTTACTCGGGTATATCActctgttgtaatgttactggggtatatcactctgttgtaatgttactggggtatattactctgttgtaatgttactggggtatattactctgttgtaatgttactggggtatattactctgttgtaatgttactggggtatatcactctgttgtaatgttactggggtatattactctgttgtaatgttactggggtatatcactctgttgtaatgttactggggtatattactctgttgtaatgttactggggtatattactctgttgtaatgttactggggtatattac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2437070 lncRNA upstream 4060 34664948 ~ 34665217 (+) True G2131410
TU2437045 lncRNA upstream 36727 34629776 ~ 34632550 (+) True LOC110509061
TU2437016 lncRNA upstream 71805 34597245 ~ 34597472 (+) True G2131379
TU2437013 lncRNA upstream 74176 34594856 ~ 34595101 (+) True G2131376
TU2437010 lncRNA upstream 79135 34589889 ~ 34590142 (+) True G2131373
TU2437077 lncRNA downstream 17864 34687883 ~ 34688100 (+) True G2131417
TU2437079 lncRNA downstream 20486 34690505 ~ 34690704 (+) True G2131419
TU2437022 lncRNA downstream 42728 34712747 ~ 34715041 (+) True G2131384
TU2437121 lncRNA downstream 53903 34723922 ~ 34724213 (+) True G2131435
TU2437112 lncRNA downstream 65306 34735325 ~ 34739189 (+) True G2131427
XM_021588662.2 mRNA upstream 14928 34653129 ~ 34654349 (+) True LOC110508234
XM_021590020.2 mRNA upstream 16755 34648851 ~ 34652522 (+) False fbxo36b
XM_036966931.1 mRNA upstream 16755 34648851 ~ 34652522 (+) True fbxo36b
XM_021590006.2 mRNA upstream 22617 34640022 ~ 34646660 (+) False agfg1b
XM_021590024.2 mRNA downstream 22276 34692295 ~ 34700231 (+) True LOC110509067
XM_021590027.2 mRNA downstream 96755 34766774 ~ 34769328 (+) True LOC110509070
XM_036966434.1 mRNA downstream 126713 34796732 ~ 34803585 (+) False LOC110509069
XM_036966435.1 mRNA downstream 126713 34796732 ~ 34803585 (+) False LOC110509069
XM_036966436.1 mRNA downstream 126713 34796732 ~ 34803585 (+) False LOC110509069
TU2437020 other upstream 64324 34603485 ~ 34604953 (+) True G2131383
TU2436600 other upstream 295267 34370861 ~ 34374010 (+) True LOC110508236
TU2436310 other upstream 600183 34038792 ~ 34069094 (+) False G2130749
TU2437076 other downstream 17252 34687271 ~ 34687640 (+) True G2131416
TU2437109 other downstream 32187 34702206 ~ 34783418 (+) True G2131426
TU2437711 other downstream 421680 35091699 ~ 35093034 (+) True G2131933
TU2438124 other downstream 1029827 35699846 ~ 35700235 (+) True G2132291
TU2438299 other downstream 1303420 35973439 ~ 35975132 (+) True LOC110508289

Expression Profile