RNA id: TCONS_00055716


Basic Information

Item Value
RNA id TCONS_00055716
length 2193
RNA type mRNA
GC content 0.36
exon number 10
gene id XLOC_028744
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20101992 ~ 20108833 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCGGGAATCGGATATTCAGCGCTGTGTCGCCGTGGCACCAGGTGTTTGGATCTTATTGTGGAGACTGGTGCCTGCTGATCCCTCAGGATGATGCGAGCAGGAGGACTTTTGAAACTGGGGGTGCTGGTTTCTGTCTTATTTGTAGCTGTGTTCCTGGCCTTTGAGCTGTTGGAGAGCAATATGAATTTTAATTTGGGAAAAGTCTTTACACGATATGCACCTCCAGATGCAGTCCCCACCAGACCACTGCGCCACAAATGCGGCCTATCAAAATCATGTCCTGAGGACCATTTTGCCTTTAAGATCACCAGTGGAGCAGCCAGTGTTGTCGGCCCAAAGATGTGTTTTCAGGACAATGTAATAATGAGCGGTGTGAAGAACAACATTGGACGCGGTATAAACATTGCTTTGCTCAATGggAAGACCGGCGAGCTCACTAAGACTGACTCATTTGACATGTGGACTGGAGATGTAAATCTTCTCATCAAATTCTTGAAGGACATAGAAGATGGAAGCATTGTCATGATGGCCACATTTGACGACCCTGCaacaaaGATGAATGACGAGGCCAGAAATTTGATAGCAGATTTGGGCAGTTCAAGCATCAGCATATTAGGCTTCCGAGATAACTGGGTGTTTGTTGGAGGCAAAGGAATCAAGACAAAGAGCccctttgagcagCACATCAAGAACAATGCAGAGACTAACAAGTATGAAGGATGGCCAGAAGTTCTGGAGATGGAAggatgcattcctataaagcatgACTGAAATcaaccttattttaaaataatttagctgTTCCTGGTGGAGTTTGAAGAAAATTGAATGAGCAATGTGTTGTTGAATTGACATTTTCAATGATGCAAGTAAGTGTAGAATATAGACTTTGAAGGACTGTATCTTATATCTTAAGGTTAGAAGTCCTGAGCATTTGCTGCtctctatttatatttattttatggggTTCCCACTCCTTTTGATCAATGCATTTCTATTACTTTTCTGTTGTACATGATCCCTAGAttgagatttttttaattaattgcaagTACAATATGTAGccagtgaaatattttaaaacttaaatataaaaaattacgtTAACCAAAGCTATTTTAGTAACTTCAAAAATTGTTGTTTTTCCACCAAtggaaaacatttctaaaatgtcATGCTTGCGGAAAACCTGATTCATAGGTActctttatttttaaagctgGTCCATAAACTGCCATTGTGCTGCCATTTGTGAACCTCCAGTGTCATAAAAAGAGATATAGGAATCAGAAGGTTTGAGTGCCTGTTGTCTTATAGTCTTTTGTACTACAAATAGAGAATTAAGGAAGAGGGTTTGTGCTCATTTTAATCATAGCACCATGACAATGTTGATCAGAATGGATTGAAGATACACGGCTTAGAGCTGTTGTTACCAAAagattgtttttacattatttattattttatgtttatcatACTGTTTCTACTGGCAAAGACAGTTTGAATGTTGAATGGTAgagaatgaagattttttttcccccactttgcatttaatttacaagattttttttgtacTAAAAAACTACTGTCTTcagtttttataataattttatttttaatagcttCAGGGAGTCTTGTTACATTTTGGTGATTTGCATTCAGAGATTTTTCGTTTGTCGTTTTATTCggccaaattttttttttttttttttttttgcattttaagagTTTGAGCAGCAGCTGTTATATGCAGTTAGTGCTGATATTAcactattataatttaatataatcttttttttattgtgctttaTGCAATATCTGTAGTATGTCCTGTATTGTGAATTTACAAAGCCAAAAGATCACCTTGTTGTTAATATTGTTAATGATTGCCTGTATGATTTTTAACTTTACTTACACTGTGAAGTTGTgcatgatacattttttttgtaagaaaACCAGCTGTGTGCCTTACTACAGTGATAATATATGCAAAGTGATTTTGTCTAGACTTTTGTGTGGAGTTGTTGATTGCACGTCATGGCCTTAATATGTATAGCTGTACTGAGGAGttctttattataaattaaatttaaatcaagtaaactTTGCATTCTGTGATTGTAGAGTCTTTCCTTAAAATACGACTCAAGCTTTTTAGGGTGTTtcgtaataaaacaaatgacttgcTTTCA

Function

GO:

id name namespace
GO:0045721 negative regulation of gluconeogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6137 Predicted to act upstream of or within negative regulation of gluconeogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in EVL; axial chorda mesoderm; notochord; periderm; and somite. Orthologous to human FAM3C (FAM3 metabolism regulating signaling molecule C).

Ensembl:

ensembl_id ENSDART00000100867

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058200 lncRNA downstream 54108 20044867 ~ 20047884 (-) False XLOC_028741
TCONS_00058199 lncRNA downstream 54108 20044867 ~ 20047884 (-) True XLOC_028741
TCONS_00058198 lncRNA downstream 54590 20044867 ~ 20047402 (-) False XLOC_028741
TCONS_00058197 lncRNA downstream 62708 20038400 ~ 20039284 (-) True XLOC_028739
TCONS_00058196 lncRNA downstream 200859 19900015 ~ 19901133 (-) True XLOC_028736
TCONS_00058201 lncRNA upstream 14080 20122913 ~ 20124058 (-) True XLOC_028746
TCONS_00055720 lncRNA upstream 17355 20126188 ~ 20127945 (-) False XLOC_028747
TCONS_00058202 lncRNA upstream 1483411 21592244 ~ 21628998 (-) True XLOC_028761
TCONS_00058203 lncRNA upstream 1525179 21634012 ~ 21647992 (-) False XLOC_028762
TCONS_00055746 lncRNA upstream 1528891 21637724 ~ 21643055 (-) False XLOC_028762
TCONS_00055715 mRNA downstream 20371 20071128 ~ 20081621 (-) True XLOC_028743
TCONS_00055713 mRNA downstream 50851 20049260 ~ 20051141 (-) False XLOC_028742
TCONS_00055712 mRNA downstream 58508 20042807 ~ 20043484 (-) True XLOC_028740
TCONS_00055711 mRNA downstream 62357 20037521 ~ 20039635 (-) False XLOC_028739
TCONS_00055710 mRNA downstream 74421 19950480 ~ 20027571 (-) True XLOC_028738
TCONS_00055717 mRNA upstream 2088 20110921 ~ 20118468 (-) False XLOC_028745
TCONS_00055718 mRNA upstream 3427 20112260 ~ 20115570 (-) True XLOC_028745
TCONS_00055719 mRNA upstream 16030 20124863 ~ 20135919 (-) False XLOC_028747
TCONS_00055721 mRNA upstream 17602 20126435 ~ 20135406 (-) True XLOC_028747
TCONS_00055722 mRNA upstream 32358 20141191 ~ 20156085 (-) True XLOC_028748
TCONS_00055714 other downstream 38758 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055699 other downstream 1054437 19047466 ~ 19047555 (-) True XLOC_028730
TCONS_00055684 other downstream 1447731 18654155 ~ 18654261 (-) True XLOC_028720
TCONS_00055683 other downstream 1448751 18653148 ~ 18653241 (-) True XLOC_028719
TCONS_00055676 other downstream 1495454 18597660 ~ 18606538 (-) False XLOC_028717
TCONS_00055724 other upstream 67310 20176143 ~ 20177868 (-) False XLOC_028749
TCONS_00055737 other upstream 287216 20396049 ~ 20396170 (-) True XLOC_028756
TCONS_00055751 other upstream 1542838 21651671 ~ 21652632 (-) True XLOC_028763
TCONS_00055755 other upstream 2127525 22236358 ~ 22237294 (-) True XLOC_028767
TCONS_00055773 other upstream 3117900 23226733 ~ 23226849 (-) True XLOC_028779

Expression Profile

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