RNA id: TU2437893



Basic Information


Item Value
RNA id TU2437893
length 390
lncRNA type intronic
GC content 0.48
exon number 1
gene id G2132091
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35410473 ~ 35410862 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtctgggcttgcagccttgcgagggttgacacgtttaaatgttttcctcacgtcggctgcagtgaaggagagtccgcatgttttagttgcgggccgtgtcagtggcactgtattgtcctcaaagcgggcaaaaaagtgatttagtctgcctgggagcaagacatcctggtccgtgacggggctggttttctttttgtaatccgtgattgactgtagaccctgccacatacctcttgtgtctgagccgttgaattgagattctactttgtctctatactgacgcttagcttgtttgattgccttgcggagggaatagttacactgtttgtattcggtcatgtttctggtcaccttgccctgattaaaagcagtggttcgggctttcagttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2437891 lncRNA downstream 2327 35407928 ~ 35408146 (-) True G2132089
TU2437885 lncRNA downstream 13218 35397017 ~ 35397255 (-) True G2132083
TU2437876 lncRNA downstream 24321 35385924 ~ 35386152 (-) True G2132074
TU2437806 lncRNA downstream 53787 35356424 ~ 35356686 (-) True G2132018
TU2437804 lncRNA downstream 75314 35334878 ~ 35335159 (-) True G2132016
TU2437910 lncRNA upstream 37094 35447956 ~ 35448195 (-) True G2132106
TU2437950 lncRNA upstream 91205 35502067 ~ 35502273 (-) True G2132134
TU2438013 lncRNA upstream 106043 35516905 ~ 35517612 (-) False LOC110509088
TU2438014 lncRNA upstream 107917 35518779 ~ 35519005 (-) True LOC110509088
TU2438031 lncRNA upstream 135511 35546373 ~ 35546616 (-) True G2132208
trnaw-cca-200 mRNA downstream 43778 35366624 ~ 35366695 (-) True trnaw-cca-200
trnaw-cca-199 mRNA downstream 45332 35365070 ~ 35365141 (-) True trnaw-cca-199
trnaw-cca-198 mRNA downstream 46891 35363511 ~ 35363582 (-) True trnaw-cca-198
trnaw-cca-197 mRNA downstream 48450 35361952 ~ 35362023 (-) True trnaw-cca-197
trnaw-cca-196 mRNA downstream 50009 35360393 ~ 35360464 (-) True trnaw-cca-196
XM_021590047.2 mRNA upstream 105878 35516740 ~ 35575981 (-) False LOC110509088
XM_036966284.1 mRNA upstream 253054 35663916 ~ 35721385 (-) False LOC110508241
XM_036966282.1 mRNA upstream 253054 35663916 ~ 35737116 (-) False LOC110508241
XM_036966286.1 mRNA upstream 253054 35663916 ~ 35763569 (-) False LOC110508241
XM_036966285.1 mRNA upstream 253054 35663916 ~ 35780400 (-) False LOC110508241
TU2437347 other downstream 892344 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 892344 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 924297 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1352203 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1367908 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 594627 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 605200 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 612918 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 612928 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 813351 36224213 ~ 36225379 (-) True G2132971

Expression Profile