RNA id: TCONS_00055718


Basic Information

Item Value
RNA id TCONS_00055718
length 837
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_028745
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20110921 ~ 20118468 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGATGCATTCGTTCAGTCATCTCATTCAACAGAGGGGGACGATGGAGATATCTGAAAAAGCCAGAGAATGTCGATTGTCCAGATATGTCGAAAAAGTGTAACCTGCACATCCATGGAGAGCACAGTCATTTTAGTGGAGTCACTCCCATGACGCCTAGCTCTGAACCTACAGCTATCGGTCTGGTCATCGGCCATGGGAGTGTTGGAGATTCCATTTCAGCAGCCCGCCCTGATGTATATGTGTCTAGGGATGGAGGTTACACATGGTGGGGAACTCTAAGAGGACCTCACCACTACAGCATACTGGACTCTGGAGGGCTAATAGTGGCTGTGGAGGCGCGCAGAGACAGAGGGATCAGCTCCATAAaGTTTTCCACAGATGAAGGGCAGTGTTGGAAGACATTTAATTTCACAGACCACCCGTTCTTTCTGGCAGGACTGGCATCAGAGCCTAGCAGCAGTACAATGAACATCAGTATTTTTGGCTACCGCCTAGATGACAATCATAAGCCTATGTGGGTAGCTGTCACCATAGACTTTGAGCACCTGCTCACTAGAGAGTGTAATGATCAGGATTATGTGACGTGGTTGGCACACTCCAACTACAGTTCTAACCCAAAAACAGATGGATGTCTCTTGGGCTATAAGGAGACATTTAGAAGACTTAAGACACTGTCTGCATGTAGAAATGGTAGAGGATATGTGGTCAGTAGACAGCAGAGTCCATGCATTTGCACCAGTGAGGACTTCATGTGCGACTATGGATTCTATTGGCATGAAAATAGCTCAGCGTGTCTCCCTCAGCCCGACTTTCTGAATCAAACCCAGGATTTTT

Function

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-204 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000134528

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058200 lncRNA downstream 64376 20044867 ~ 20047884 (-) False XLOC_028741
TCONS_00058199 lncRNA downstream 64376 20044867 ~ 20047884 (-) True XLOC_028741
TCONS_00058198 lncRNA downstream 64858 20044867 ~ 20047402 (-) False XLOC_028741
TCONS_00058197 lncRNA downstream 72976 20038400 ~ 20039284 (-) True XLOC_028739
TCONS_00058196 lncRNA downstream 211127 19900015 ~ 19901133 (-) True XLOC_028736
TCONS_00058201 lncRNA upstream 7343 20122913 ~ 20124058 (-) True XLOC_028746
TCONS_00055720 lncRNA upstream 10618 20126188 ~ 20127945 (-) False XLOC_028747
TCONS_00058202 lncRNA upstream 1476674 21592244 ~ 21628998 (-) True XLOC_028761
TCONS_00058203 lncRNA upstream 1518442 21634012 ~ 21647992 (-) False XLOC_028762
TCONS_00055746 lncRNA upstream 1522154 21637724 ~ 21643055 (-) False XLOC_028762
TCONS_00055716 mRNA downstream 3427 20101992 ~ 20108833 (-) True XLOC_028744
TCONS_00055715 mRNA downstream 30639 20071128 ~ 20081621 (-) True XLOC_028743
TCONS_00055713 mRNA downstream 61119 20049260 ~ 20051141 (-) False XLOC_028742
TCONS_00055712 mRNA downstream 68776 20042807 ~ 20043484 (-) True XLOC_028740
TCONS_00055711 mRNA downstream 72625 20037521 ~ 20039635 (-) False XLOC_028739
TCONS_00055719 mRNA upstream 9293 20124863 ~ 20135919 (-) False XLOC_028747
TCONS_00055721 mRNA upstream 10865 20126435 ~ 20135406 (-) True XLOC_028747
TCONS_00055722 mRNA upstream 25621 20141191 ~ 20156085 (-) True XLOC_028748
TCONS_00055723 mRNA upstream 60573 20176143 ~ 20177868 (-) True XLOC_028749
TCONS_00055725 mRNA upstream 63124 20178694 ~ 20181964 (-) True XLOC_028750
TCONS_00055714 other downstream 49026 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055699 other downstream 1064705 19047466 ~ 19047555 (-) True XLOC_028730
TCONS_00055684 other downstream 1457999 18654155 ~ 18654261 (-) True XLOC_028720
TCONS_00055683 other downstream 1459019 18653148 ~ 18653241 (-) True XLOC_028719
TCONS_00055676 other downstream 1505722 18597660 ~ 18606538 (-) False XLOC_028717
TCONS_00055724 other upstream 60573 20176143 ~ 20177868 (-) False XLOC_028749
TCONS_00055737 other upstream 280479 20396049 ~ 20396170 (-) True XLOC_028756
TCONS_00055751 other upstream 1536101 21651671 ~ 21652632 (-) True XLOC_028763
TCONS_00055755 other upstream 2120788 22236358 ~ 22237294 (-) True XLOC_028767
TCONS_00055773 other upstream 3111163 23226733 ~ 23226849 (-) True XLOC_028779

Expression Profile

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