RNA id: TCONS_00005268


Basic Information

Item Value
RNA id TCONS_00005268
length 1328
RNA type mRNA
GC content 0.49
exon number 11
gene id XLOC_002840
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29112756 ~ 29120535 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGGATGCTGGGTAATCCAGTCAGTCTCGCGCCACAGCTGAGAACAGATGGAGTACCGCTGATTCTACAGCTGCCAGGAAAGCGGGTGATTGAAATGGAACGTTTGTGTGTGATTCTCTTGCTTGTAAGTAAAACTTTCATAGCGAATGCTCAATTCAATGGGTTCAACTGTGATGCCAACTTCCACAGCCGCTTCCCCGCCGAGCGGGACATCAGTGTGTATTGTGGAGTTCAAACCATAACTCTGAAGATTAATTTTTGCCCGGTGCTTTTTTCTGGCTACACTGACACTGACCTGGCACTGAATGGGCGTCACGGGGATGCCCACTGCAGAGGCTTCATCAACAACAACACGTTCCCCACGGTTGTGCTGTTTAGCATCAGTCTCAACACTCTGGAGTCTTGCGGAAACTCACTGGTGGTCTCTACGGCTCATGGGCCCAACGCCTATGGGAATCTTTCCCTGGTCCAGATTGGGAATATAGCAGGATACATTGACACTCCGGATCCCCCGACTGTCATCAGTTACCTACCAGGACTGCTTTACAAGTTCAGTTGTAGCTACCCACTGGAATACCTGGTCAACAACACACAGCTTGCTTCGTCGGCCGCAGCGATATCAGTGAAGGACAGTAATGGTACTTTTGTTAGCACGCTCAATTTGCTTCTATACAACGACTCCTCATACATTCAGAACCTCGCCATCCCAATGTCTGGACTTACTCTGAAGACGCGAGTGTTCGCCGCTGTAAAAGCCACCAACCTAGATAGGAGGTGGAACGTTCTGATGGACTACTGTTACACCACTCCCTCTGGAAATCCTAATGATGAGCTGCGATATGATCTTTTCTTTGGATGCGATAAGGACCCACAGACGACAGTGTTTGAGAACGGGAAGAGCCAGATGGGTCGCTTCTCCTTTGAGGTGTTTCGCTTTGTCAAGCACAAAAACCAGAAAATGTCGACTGTTTTTCTGCACTGCGTGACCAAGCTGTGTCGCTCTGATGACTGCCCCATGCTCCTGCCCATCTGCGGTAAGAGGAAGAAAAGGGATGTGTCAGAAAGAAGCGGTGGTGCCTCAGACAATGCAGTTATAACCGCTGGACCCATCATCACCCGAAATGAAACTCCCAGTAATATATCCCAACTAGCGCAGTTAAACGGCCCTCCATTCAAAATGAATTCAGTGACGAGCGCTTTAATTTCTGCCATCGCGATCCTCGCCGTTATGAGCATGTGTTTCTTCATCTTGTCTATGTCGCTGCTGAGGGGAAAACAGACGCCAGCAACATCTCTATCAGGATCCCACAACCCAGCGTTCAGctaa

Function

GO:

id name namespace
GO:0005615 extracellular space cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-81 Predicted to be an extracellular matrix structural constituent. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and extracellular space. Is expressed in anterior crista; lateral crista; and posterior crista. Orthologous to human ZPLD1 (zona pellucida like domain containing 1).

Ensembl:

ensembl_id ENSDART00000149140

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006074 lncRNA downstream 648411 28460213 ~ 28465026 (-) True XLOC_002834
TCONS_00005770 lncRNA downstream 695258 28417651 ~ 28418179 (-) True XLOC_002830
TCONS_00006073 lncRNA downstream 727868 28382085 ~ 28385569 (-) True XLOC_002828
TCONS_00006072 lncRNA downstream 727883 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00005269 lncRNA upstream 7667 29128202 ~ 29138004 (-) True XLOC_002841
TCONS_00006075 lncRNA upstream 145735 29266270 ~ 29491087 (-) True XLOC_002843
TCONS_00005294 lncRNA upstream 2142317 31262852 ~ 31294777 (-) False XLOC_002858
TCONS_00006076 lncRNA upstream 2142317 31262852 ~ 31295006 (-) True XLOC_002858
TCONS_00006077 lncRNA upstream 2957276 32077811 ~ 32084121 (-) False XLOC_002862
TCONS_00005265 mRNA downstream 11588 29087810 ~ 29101849 (-) False XLOC_002839
TCONS_00005264 mRNA downstream 11588 29087810 ~ 29101849 (-) False XLOC_002839
TCONS_00005266 mRNA downstream 11722 29094277 ~ 29101715 (-) True XLOC_002839
TCONS_00005261 mRNA downstream 277625 28736876 ~ 28835812 (-) True XLOC_002836
TCONS_00005260 mRNA downstream 277666 28733021 ~ 28835771 (-) False XLOC_002836
TCONS_00005270 mRNA upstream 105645 29226180 ~ 29236860 (-) True XLOC_002842
TCONS_00005272 mRNA upstream 149463 29269998 ~ 29272757 (-) False XLOC_002844
TCONS_00005271 mRNA upstream 149463 29269998 ~ 29272757 (-) True XLOC_002844
TCONS_00005274 mRNA upstream 610525 29731060 ~ 29733194 (-) True XLOC_002846
TCONS_00005275 mRNA upstream 615365 29735900 ~ 29744921 (-) False XLOC_002847
TCONS_00005263 other downstream 189804 28923517 ~ 28923633 (-) True XLOC_002838
TCONS_00005262 other downstream 191186 28922135 ~ 28922251 (-) True XLOC_002837
TCONS_00005252 other downstream 658266 28454500 ~ 28455171 (-) True XLOC_002833
TCONS_00005251 other downstream 664569 28447906 ~ 28448868 (-) True XLOC_002832
TCONS_00005250 other downstream 669697 28442740 ~ 28443740 (-) True XLOC_002831
TCONS_00005273 other upstream 587533 29708068 ~ 29708182 (-) True XLOC_002845
TCONS_00005276 other upstream 615651 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005286 other upstream 1410608 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005293 other upstream 1900821 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005308 other upstream 3422001 32542536 ~ 32610769 (-) False XLOC_002866

Expression Profile

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