RNA id: TCONS_00055720


Basic Information

Item Value
RNA id TCONS_00055720
length 651
lncRNA type retained_intron
GC content 0.37
exon number 3
gene id XLOC_028747
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20124863 ~ 20135919 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGCTTATTAGCAAATAGCTGAGCTCAACTTACAGGTAGGAACCCTTTCTCACTCTGAGAGTGAGTTgctggacaccaacaacagactGAGAGAAAGTCTGGAGCGTGTGAGAGAGGACCTGCGCAGTGCTCGAACACAAATGGAACGGACCCAACAGGAAGCCGAGAGGTTGGTGGAGGAAAGGCGAGTTGAATGGTTGGAGGAGAAACACAAGCTGCAAGACATAGAAGCAGAACTACGGGAGAAATACAGCCAGGCCAAAGAGCGCCTACAGAGGGCAGCATTTGCTCAGAAAAAGAGGAAAACAATGACTGAACTGAAAGAAAACAAACTCAAAGACAAGATTCAGCTCCTGGAAGCCAAGATAGCAGAACTTGAAATTGAAGCAAGTGCAGAAAAGAAGTAGGATacttttgtttgcatattgcttcATACATTCAAAACTATCTAGAGGTTATATTTtagtcaaataaacaataaaaaattatactttgctcatttattttaagttatttttaaacaattgatttaaatatattgttattaattacattcaaaatgcacagtaaaatattaaattaaatatttacataaatgtgctgttttattagtgtttttaatGTATCTTTTAGGAAATCCTCATATTCTG

Function

GO:

id name namespace
GO:0048278 vesicle docking biological_process
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0005814 centriole cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-110321-1 Acts upstream of or within cilium assembly. Predicted to be located in centriole. Is expressed in olfactory placode; post-vent region; and pronephric duct. Human ortholog(s) of this gene implicated in nephronophthisis 18. Orthologous to human CEP83 (centrosomal protein 83).

Ensembl:

ensembl_id ENSDART00000165558

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058201 lncRNA downstream 2130 20122913 ~ 20124058 (-) True XLOC_028746
TCONS_00058200 lncRNA downstream 78304 20044867 ~ 20047884 (-) False XLOC_028741
TCONS_00058199 lncRNA downstream 78304 20044867 ~ 20047884 (-) True XLOC_028741
TCONS_00058198 lncRNA downstream 78786 20044867 ~ 20047402 (-) False XLOC_028741
TCONS_00058197 lncRNA downstream 86904 20038400 ~ 20039284 (-) True XLOC_028739
TCONS_00058202 lncRNA upstream 1464299 21592244 ~ 21628998 (-) True XLOC_028761
TCONS_00058203 lncRNA upstream 1506067 21634012 ~ 21647992 (-) False XLOC_028762
TCONS_00055746 lncRNA upstream 1509779 21637724 ~ 21643055 (-) False XLOC_028762
TCONS_00055748 lncRNA upstream 1514940 21642885 ~ 21647587 (-) False XLOC_028762
TCONS_00055747 lncRNA upstream 1514940 21642885 ~ 21647587 (-) True XLOC_028762
TCONS_00055717 mRNA downstream 7720 20110921 ~ 20118468 (-) False XLOC_028745
TCONS_00055718 mRNA downstream 10618 20112260 ~ 20115570 (-) True XLOC_028745
TCONS_00055716 mRNA downstream 17355 20101992 ~ 20108833 (-) True XLOC_028744
TCONS_00055715 mRNA downstream 44567 20071128 ~ 20081621 (-) True XLOC_028743
TCONS_00055713 mRNA downstream 75047 20049260 ~ 20051141 (-) False XLOC_028742
TCONS_00055722 mRNA upstream 13246 20141191 ~ 20156085 (-) True XLOC_028748
TCONS_00055723 mRNA upstream 48198 20176143 ~ 20177868 (-) True XLOC_028749
TCONS_00055725 mRNA upstream 50749 20178694 ~ 20181964 (-) True XLOC_028750
TCONS_00055726 mRNA upstream 70349 20198294 ~ 20208166 (-) False XLOC_028751
TCONS_00055727 mRNA upstream 70551 20198496 ~ 20222182 (-) True XLOC_028751
TCONS_00055714 other downstream 62954 20049324 ~ 20063234 (-) True XLOC_028742
TCONS_00055699 other downstream 1078633 19047466 ~ 19047555 (-) True XLOC_028730
TCONS_00055684 other downstream 1471927 18654155 ~ 18654261 (-) True XLOC_028720
TCONS_00055683 other downstream 1472947 18653148 ~ 18653241 (-) True XLOC_028719
TCONS_00055676 other downstream 1519650 18597660 ~ 18606538 (-) False XLOC_028717
TCONS_00055724 other upstream 48198 20176143 ~ 20177868 (-) False XLOC_028749
TCONS_00055737 other upstream 268104 20396049 ~ 20396170 (-) True XLOC_028756
TCONS_00055751 other upstream 1523726 21651671 ~ 21652632 (-) True XLOC_028763
TCONS_00055755 other upstream 2108413 22236358 ~ 22237294 (-) True XLOC_028767
TCONS_00055773 other upstream 3098788 23226733 ~ 23226849 (-) True XLOC_028779

Expression Profile

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