RNA id: TU2438654



Basic Information


Item Value
RNA id TU2438654
length 252
lncRNA type intronic
GC content 0.46
exon number 1
gene id G2132754
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35709086 ~ 35709337 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACAGTATCAGTGGCTTCAAAGTTcaagccatgacaacatggaaaAATGACCAAAAGCACTCTCTCTCCAACATCTGTTTTGGTCAAACCATTGACCACTAGCCCCTATAGACTTGAACTCGAGGaagtgatggagaaagagagaatcttGTCCAAACACTCTCCAGAAGTGACcgagtgaccacacacacacacacacacacacaaagacacagtacacacatacagtgACCCCAACATGGCCAGATGGGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2438652 lncRNA downstream 3165 35705689 ~ 35705921 (-) True G2132752
TU2438059 lncRNA downstream 119653 35589165 ~ 35589433 (-) True G2132236
TU2438038 lncRNA downstream 153933 35554843 ~ 35555153 (-) True G2132215
TU2438031 lncRNA downstream 162470 35546373 ~ 35546616 (-) True G2132208
TU2438014 lncRNA downstream 190081 35518779 ~ 35519005 (-) True LOC110509088
TU2438655 lncRNA upstream 735 35710072 ~ 35710391 (-) True G2132755
TU2438660 lncRNA upstream 11643 35720980 ~ 35721273 (-) True LOC110508241
TU2438668 lncRNA upstream 19425 35728762 ~ 35729104 (-) True G2132768
TU2438680 lncRNA upstream 48001 35757338 ~ 35758059 (-) True G2132779
TU2438686 lncRNA upstream 57459 35766796 ~ 35767141 (-) True G2132785
XM_021590047.2 mRNA downstream 133105 35516740 ~ 35575981 (-) False LOC110509088
LOC110508240 mRNA downstream 279787 35391006 ~ 35429299 (-) True LOC110508240
trnaw-cca-200 mRNA downstream 342391 35366624 ~ 35366695 (-) True trnaw-cca-200
trnaw-cca-199 mRNA downstream 343945 35365070 ~ 35365141 (-) True trnaw-cca-199
trnaw-cca-198 mRNA downstream 345504 35363511 ~ 35363582 (-) True trnaw-cca-198
XM_021590052.2 mRNA upstream 72812 35782149 ~ 35812072 (-) False tfr1a
XM_021590049.2 mRNA upstream 72812 35782149 ~ 35813145 (-) False tfr1a
XM_021590050.2 mRNA upstream 72812 35782149 ~ 35813447 (-) False tfr1a
XM_036966684.1 mRNA upstream 124646 35833983 ~ 35841991 (-) False LOC110509089
XM_036966685.1 mRNA upstream 124646 35833983 ~ 35842022 (-) True LOC110509089
TU2437347 other downstream 1190957 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 1190957 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 1222910 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1650816 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1666521 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 296152 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 306725 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 314443 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 314453 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 514876 36224213 ~ 36225379 (-) True G2132971

Expression Profile