RNA id: TU2438655



Basic Information


Item Value
RNA id TU2438655
length 320
lncRNA type intronic
GC content 0.41
exon number 1
gene id G2132755
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35710072 ~ 35710391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTTGGTCTAAATCTTACACAGGTTCCCGTCTAGAAAACAGGGTCCCATCTGGACAACACATCTAATTCAGATGATCAAAAATCGTTAACAGGGAAGAGAGAATACCCTCACCTCTCCCCCATTAGTTTTTTTTTACGTCAAATGTTTTAGCACCGTGAGTGAAACAGAGCCACTGTAGGCCTaattggtaaaagggcttttatgtcccctctgcgccatcgtcttggaacaccttacaaaatacttttaaactggaagaacttgtcccgattggtgtttttaaatcactgattaaggattttgaggctgattccctgac

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2438654 lncRNA downstream 735 35709086 ~ 35709337 (-) True G2132754
TU2438652 lncRNA downstream 4151 35705689 ~ 35705921 (-) True G2132752
TU2438059 lncRNA downstream 120639 35589165 ~ 35589433 (-) True G2132236
TU2438038 lncRNA downstream 154919 35554843 ~ 35555153 (-) True G2132215
TU2438031 lncRNA downstream 163456 35546373 ~ 35546616 (-) True G2132208
TU2438660 lncRNA upstream 10589 35720980 ~ 35721273 (-) True LOC110508241
TU2438668 lncRNA upstream 18371 35728762 ~ 35729104 (-) True G2132768
TU2438680 lncRNA upstream 46947 35757338 ~ 35758059 (-) True G2132779
TU2438686 lncRNA upstream 56405 35766796 ~ 35767141 (-) True G2132785
TU2438688 lncRNA upstream 59627 35770018 ~ 35770232 (-) True G2132787
XM_021590047.2 mRNA downstream 134091 35516740 ~ 35575981 (-) False LOC110509088
LOC110508240 mRNA downstream 280773 35391006 ~ 35429299 (-) True LOC110508240
trnaw-cca-200 mRNA downstream 343377 35366624 ~ 35366695 (-) True trnaw-cca-200
trnaw-cca-199 mRNA downstream 344931 35365070 ~ 35365141 (-) True trnaw-cca-199
trnaw-cca-198 mRNA downstream 346490 35363511 ~ 35363582 (-) True trnaw-cca-198
XM_021590052.2 mRNA upstream 71758 35782149 ~ 35812072 (-) False tfr1a
XM_021590049.2 mRNA upstream 71758 35782149 ~ 35813145 (-) False tfr1a
XM_021590050.2 mRNA upstream 71758 35782149 ~ 35813447 (-) False tfr1a
XM_036966684.1 mRNA upstream 123592 35833983 ~ 35841991 (-) False LOC110509089
XM_036966685.1 mRNA upstream 123592 35833983 ~ 35842022 (-) True LOC110509089
TU2437347 other downstream 1191943 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 1191943 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 1223896 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1651802 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1667507 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 295098 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 305671 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 313389 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 313399 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 513822 36224213 ~ 36225379 (-) True G2132971

Expression Profile